View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8903_low_70 (Length: 290)
Name: NF8903_low_70
Description: NF8903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8903_low_70 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 29 - 270
Target Start/End: Complemental strand, 34250953 - 34250712
Alignment:
| Q |
29 |
aaggttgtgcaaaacgacgcttactgaattgcactttcattgtttttcctggatagagctcatgttcatagaaaaatgtttttggatattgtgtgtcgtc |
128 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34250953 |
aaggttgtgcaaaaggacgcttactgaattgcactttcattgtttttcctggatagagctcatgttcatagaaaaatgtttttggatattgtgtgtcgtc |
34250854 |
T |
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| Q |
129 |
gacttccatgggaaggtcatcaatttcaccacctgtgtcataataataaaaaattattacctcctccgtcccaaaataaccgagtcatttgtaaacagaa |
228 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
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| T |
34250853 |
gacttccatgggaaggtcatcaatttcaacacctgtgtcataataataaaaaattattacctcctccgtcccaaaataaccgagtcatttgcaaacaaaa |
34250754 |
T |
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| Q |
229 |
aaaacttgtaaagtgcataattcatgcaatcaaaccttcagg |
270 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| |
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| T |
34250753 |
aaaaattgtaaagtgcataattcatgcaatcaaaccttcagg |
34250712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 29 - 166
Target Start/End: Complemental strand, 34241191 - 34241054
Alignment:
| Q |
29 |
aaggttgtgcaaaacgacgcttactgaattgcactttcattgtttttcctggatagagctcatgttcatagaaaaatgtttttggatattgtgtgtcgtc |
128 |
Q |
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|||||||||| || ||||||| |||||||||| ||||||||||| || ||||| || ||||||||||||||||| || |||| |||||||||| || |
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| T |
34241191 |
aaggttgtgctaagggacgcttgctgaattgcatgttcattgttttgccaggataaagttcatgttcatagaaaaagtttgttgggaattgtgtgtcatc |
34241092 |
T |
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| Q |
129 |
gacttccatgggaaggtcatcaatttcaccacctgtgt |
166 |
Q |
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| T |
34241091 |
aatttccgttgggaggtcatcaatttcaacacctgtgt |
34241054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 223
Target Start/End: Original strand, 230156 - 230188
Alignment:
| Q |
191 |
cctccgtcccaaaataaccgagtcatttgtaaa |
223 |
Q |
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| T |
230156 |
cctccgtcccataataaccgagtcatttgtaaa |
230188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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