View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8903_low_71 (Length: 290)
Name: NF8903_low_71
Description: NF8903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8903_low_71 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 47754649 - 47754925
Alignment:
| Q |
1 |
acagcaatcaaatagttgtgatcaaaaaatcattgtgaattctgatggaagttacaagacttctgatttctctatgtcattacaagaccttgttggtatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
47754649 |
acagcaatcaaatagttgtgatcaaaaaatcattgtgaattctgatggaagttacaagaattctgattactctatgtcattacaagaccttgttggtatt |
47754748 |
T |
|
| Q |
101 |
aattcagttggtttggatgattctaccaaaatagggacacatttttcaaatccatcatcattggtgacaagtttaagtagttcaagagaagctagtcctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47754749 |
aattcagttggtttggatgattctaccaaaatagggacacatttttcaaatccatcatcattggtgacaagtttaagtagttcaagagaagctagtcctg |
47754848 |
T |
|
| Q |
201 |
ataaaactgctccctcactactctttccaaagccttcaatggaatcaaaaattgccactaatgttgctgttagttct |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47754849 |
ataaaactgctccctcactactctttccaaagccttcaatggaatcaaaaattgccactaatgttgctgttagttct |
47754925 |
T |
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