View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8903_low_75 (Length: 282)
Name: NF8903_low_75
Description: NF8903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8903_low_75 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 15 - 279
Target Start/End: Original strand, 38590386 - 38590650
Alignment:
| Q |
15 |
gaagaaggctctacttgtgattcaccattggaattgtccgcattcggagcgatttcaactatattatcggaactgatcaagacagagtctgcatgaacat |
114 |
Q |
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| T |
38590386 |
gaagaaggctctacttgtgattcaccattggaattgtccgcattcggagcgatttcaactatattatcggaactgatcaagacagaatctgcatgaacat |
38590485 |
T |
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| Q |
115 |
ttgtcatctctacacctgagatagtgacacaaacaattcttatatttcaatatgactgaattaataataagacaaacaaggagtccttgtataattcagc |
214 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
38590486 |
ttgtcatctctacacctgagatattgacacaaacaattcttatatttcaatatgactgaattaataataagacaaacaaagagtccttgtataattcagc |
38590585 |
T |
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| Q |
215 |
atatattcactcacctccctgtcatgtgtccagccacaccagcttcctacttgggggttaagatc |
279 |
Q |
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| T |
38590586 |
atatattcactcacctacctgtcatgtgtccagccacaccagcttcctacttgggggttaagatc |
38590650 |
T |
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