View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8903_low_77 (Length: 277)
Name: NF8903_low_77
Description: NF8903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8903_low_77 |
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Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 4314927 - 4315187
Alignment:
| Q |
1 |
ccacaccacccatgccaactatggcgatcacactcacacgagtcttatcatcaacatgatcatcatctaacagtaacttgagcatggccattttgtcttg |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4314927 |
ccacaccacccatgccaactatggggatcacactcacacgagtcttatcatcaacatgatcatcatctaacagtaacttgagcatggccattttgtcttg |
4315026 |
T |
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| Q |
101 |
atccctaccaaataagttagattcgccggcatctagagaggtggatggagttctccaagaagagtggtggtgagttgcaatatgttgaagaccaagaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4315027 |
atccctaccaaataagttagattcgccggcatctagagaggtggatggagttctccaagaagagtggtggtgagttgcaatatgttgaagaccaagaata |
4315126 |
T |
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| Q |
201 |
tctttgaacttgagaatgtattcaagtttagcaactatatcttccaacttacaaaccatat |
261 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4315127 |
tctttgaacttgagaatgtattcaagtttagcaactatatcttccaacttacaaaccatat |
4315187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 4306065 - 4306325
Alignment:
| Q |
1 |
ccacaccacccatgccaactatggcgatcacactcacacgagtcttatcatcaacatgatcatcatctaacagtaacttgagcatggccattttgtcttg |
100 |
Q |
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|||| ||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
4306065 |
ccaccccacccatgccaactatggggatcacagtcacacaagtcttatcatcaacatgatcatcatctaacagtaacttgagaatgaccattttgtcttg |
4306164 |
T |
|
| Q |
101 |
atccctaccaaataagttagattcgccggcatctagagaggtggatggagttctccaagaagagtggtggtgagttgcaatatgttgaagaccaagaata |
200 |
Q |
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| T |
4306165 |
atccctaccaaataagttagattcaccggcatctagagaggtggatggagttctccaagaagagtggtggtgagttgcaatatgttgaagaccaaaaata |
4306264 |
T |
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| Q |
201 |
tctttgaacttgagaatgtattcaagtttagcaactatatcttccaacttacaaaccatat |
261 |
Q |
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|||||||| |||||||||||||||||| |||||||||||||| |||||| ||||||||||| |
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| T |
4306265 |
tctttgaatttgagaatgtattcaagtctagcaactatatctaccaactcacaaaccatat |
4306325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 4246441 - 4246192
Alignment:
| Q |
1 |
ccacaccacccatgccaactatggcgatcacactcacacgagtcttatcatcaacatgatcatcatctaacagtaacttgagcatggccattttgtcttg |
100 |
Q |
| |
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|||||||||||||||||||||||| ||||||| ||| || |||||||||||||||||||||||| |||| |||| ||||||||||| |
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| T |
4246441 |
ccacaccacccatgccaactatggggatcacagtcatacaagtcttatcatcaacatgatcatcgtcta---------------tggcaattttgtcttg |
4246357 |
T |
|
| Q |
101 |
atccctaccaaataagttagattcgccggcatctagagaggtggatggagttctccaagaagagtggtggtgagttgcaatatgttgaagaccaagaata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||| ||||||| |
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| T |
4246356 |
atccctaccaaataagttagattcgccggcatctagagaggtggatggagttctccaagaagagtggtgatcagttgcaacatgttgaagactaagaata |
4246257 |
T |
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| Q |
201 |
tctttgaacttgagaatgtattcaagtttagcaact----atatcttccaacttacaaaccatat |
261 |
Q |
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|||||||| ||||||||||||||||| |||||||| ||||||||||||||| ||||||||| |
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| T |
4246256 |
tctttgaatttgagaatgtattcaagcctagcaactatatatatcttccaacttaaaaaccatat |
4246192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 59 - 255
Target Start/End: Complemental strand, 4253509 - 4253316
Alignment:
| Q |
59 |
atcatcatctaacagtaacttgagcatggccattttgtcttgatccctaccaaataagttagattcgccggcatctagagaggtggatggagttctccaa |
158 |
Q |
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|||||||||||||||||| ||||| |||||| |||||||| |||||||||||||| ||||||| | | |||||||||||| |||| |||||||||| |
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| T |
4253509 |
atcatcatctaacagtaatttgagtatggcctttttgtctgcatccctaccaaatatgttagatgggtc---atctagagaggttgatgaagttctccaa |
4253413 |
T |
|
| Q |
159 |
gaagagtggtggtgagttgcaatatgttgaagaccaagaatatctttgaacttgagaatgtattcaagtttagcaactatatcttccaacttacaaa |
255 |
Q |
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| T |
4253412 |
gaagagtggtgttcgattgcaatatgttgaagaccaagaatatctttgaatttgagaatggattcaagtttagcaactatattttccagcttacaaa |
4253316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 169 - 261
Target Start/End: Original strand, 4309114 - 4309206
Alignment:
| Q |
169 |
ggtgagttgcaatatgttgaagaccaagaatatctttgaacttgagaatgtattcaagtttagcaactatatcttccaacttacaaaccatat |
261 |
Q |
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||||||||||||||||||||||||||||||||| |||| || ||||||||||||||| |||||||||| |||||||||||| ||||||||| |
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| T |
4309114 |
ggtgagttgcaatatgttgaagaccaagaatattattgattttcagaatgtattcaagtctagcaactatgtcttccaacttataaaccatat |
4309206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 149; Significance: 9e-79; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 41933002 - 41932742
Alignment:
| Q |
1 |
ccacaccacccatgccaactatggcgatcacactcacacgagtcttatcatcaacatgatcatcatctaacagtaacttgagcatggccattttgtcttg |
100 |
Q |
| |
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|||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| |
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| T |
41933002 |
ccaccccacccatgccaactatggggatcacactcacacaagtcttatcatcaacatgatcatcatctaagagtaacttgagtatggcttctttgtcttt |
41932903 |
T |
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| Q |
101 |
atccctaccaaataagttagattcgccggcatctagagaggtggatggagttctccaagaagagtggtggtgagttgcaatatgttgaagaccaagaata |
200 |
Q |
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||| || ||||||| | |||||||||| ||||| |||||||| ||||| |||||||||||||||||||||| | | |||||||||||||||||||||||| |
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| T |
41932902 |
atctcttccaaatatgctagattcgccagcatcaagagaggttgatggggttctccaagaagagtggtggtcactagcaatatgttgaagaccaagaata |
41932803 |
T |
|
| Q |
201 |
tctttgaacttgagaatgtattcaagtttagcaactatatcttccaacttacaaaccatat |
261 |
Q |
| |
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|||||||| ||||||||| |||||||| |||| | |||| |||||||||||||| ||||| |
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|
| T |
41932802 |
tctttgaatttgagaatggattcaagtctagcggcgatattttccaacttacaaaacatat |
41932742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 41 - 261
Target Start/End: Original strand, 34803002 - 34803213
Alignment:
| Q |
41 |
agtcttatcatcaacatgatcatcatctaacagtaacttgagcatggccattttgtcttgatccctaccaaataagttagattcgccggcatctagagag |
140 |
Q |
| |
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||||||||||| | ||| | |||||||||||||||| ||||| || ||| |||||||| |||||| ||||||| |||| || ||||||||||||||| |
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|
| T |
34803002 |
agtcttatcattatcatcaccatcatctaacagtaatttgagtatcgcctctttgtctttatccctgccaaatatgttacat---ccggcatctagagag |
34803098 |
T |
|
| Q |
141 |
gtggatggagttctccaagaagagtggtggtgagttgcaatatgttgaagaccaagaatatctttgaacttgagaatgtattcaagtttagcaactatat |
240 |
Q |
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|| ||||||||||||||||| ||||| | ||||||| |||||||||||||||||||||||||| || ||||||||||||||| ||| | |||| | |
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| T |
34803099 |
gtagatggagttctccaaga------gtggtcacttgcaatgtgttgaagaccaagaatatctttgaattttagaatgtattcaagtctagaagctatgt |
34803192 |
T |
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| Q |
241 |
cttccaacttacaaaccatat |
261 |
Q |
| |
|
||| |||||| ||||||||| |
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|
| T |
34803193 |
tttctaacttaaaaaccatat |
34803213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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