View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8903_low_82 (Length: 275)
Name: NF8903_low_82
Description: NF8903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8903_low_82 |
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Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 9 - 264
Target Start/End: Complemental strand, 39702997 - 39702742
Alignment:
| Q |
9 |
agcacagataccaaatcctaaagaccaacccaaattatcttcaatgtaaataactccagttaatgcagctccagaagcaacatagaaagtgaaaaagaac |
108 |
Q |
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| T |
39702997 |
agcacagataccaaatcctaaagaccaacccaaattatcttcaatgtaaataactccagttaatgcagctccagaagcaacatagaaagtgaaaaagaac |
39702898 |
T |
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| Q |
109 |
cagttgaaaaatgttccttgatcttcaagtttgtcaaactgatttgcacctagtgatgctgctgtgaaacgtgaaccaccaaaaccaattgatattagga |
208 |
Q |
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| T |
39702897 |
cagttgaaaaatgttccttgatcttcaagtttgtcaaactgatttgcacctagtgatgctgctgtgaaacgtgaaccaccaaaaccaattgatattagga |
39702798 |
T |
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| Q |
209 |
ctatgcttatgtataaaactgtatattggattcctgttggtggtatgcatgtgatg |
264 |
Q |
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| T |
39702797 |
ctatgcttatgtataaaactgtatattggattcctgttggtggtatgcatgtgatg |
39702742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 9 - 260
Target Start/End: Original strand, 39930302 - 39930553
Alignment:
| Q |
9 |
agcacagataccaaatcctaaagaccaacccaaattatcttcaatgtaaataactccagttaatgcagctccagaagcaacatagaaagtgaaaaagaac |
108 |
Q |
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| T |
39930302 |
agcacaaataccaaatcctatagcccaacccaaattatcttcaatgtaaataattccagttaatgcagctcctgaagcaacatagaaagtgaagaagtac |
39930401 |
T |
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| Q |
109 |
cagttgaaaaatgttccttgatcttcaagtttgtcaaactgatttgcacctagtgatgctgctgtgaaacgtgaaccaccaaaaccaattgatattagga |
208 |
Q |
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| T |
39930402 |
cagttgaaaaatgttccttgatgttctggtttgtcaaattgatttgcacctaatgatgctgctgtgaaacgcgaaccaccaaaaccaattgatattaata |
39930501 |
T |
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| Q |
209 |
ctatgcttatgtataaaactgtatattggattcctgttggtggtatgcatgt |
260 |
Q |
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| T |
39930502 |
atatgcttatgtataaaactgtgtattggattcctgttggtggtttgcatgt |
39930553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 11 - 263
Target Start/End: Complemental strand, 39693022 - 39692770
Alignment:
| Q |
11 |
cacagataccaaatcctaaagaccaacccaaattatcttcaatgtaaataactccagttaatgcagctccagaagcaacatagaaagtgaaaaagaacca |
110 |
Q |
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| T |
39693022 |
cacagataccaaatcctgtagcccaacccaaattatcttcaatgtaaataattccagttaatgcagctcctgaagcaacatagaaagcgaaaaagaacca |
39692923 |
T |
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| Q |
111 |
gttgaaaaatgttccttgatcttcaagtttgtcaaactgatttgcacctagtgatgctgctgtgaaacgtgaaccaccaaaaccaattgatattaggact |
210 |
Q |
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| T |
39692922 |
gttgaaaaatattccctgatgttctggtttgttaaattgattggctcctagtgatgctgctgtgtaacgtgaaccaccaaaaccaattgatattaacact |
39692823 |
T |
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| Q |
211 |
atgcttatgtataaaactgtatattggattcctgttggtggtatgcatgtgat |
263 |
Q |
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| T |
39692822 |
atgcttatgtataaaactgtatattggattcctgttggtggtttgcatgtgat |
39692770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 186 - 264
Target Start/End: Original strand, 39935021 - 39935099
Alignment:
| Q |
186 |
accaaaaccaattgatattaggactatgcttatgtataaaactgtatattggattcctgttggtggtatgcatgtgatg |
264 |
Q |
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| T |
39935021 |
accaaaaccaattgatattaataatatgcttatgtataaaactgtgtattggattcctgttggtggtttgcatgtgatg |
39935099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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