View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8903_low_83 (Length: 271)
Name: NF8903_low_83
Description: NF8903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8903_low_83 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 16 - 261
Target Start/End: Original strand, 27017600 - 27017848
Alignment:
| Q |
16 |
atcacccaacattcaaccctatatagcacggctggtcttatgctttacagggcnnnnnnnnnnnnnn---cttgagtaacatttctctatcacaaatcac |
112 |
Q |
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| T |
27017600 |
atcacccaacattcaaccctatatagcacggctggtcttatgctttacagggcaaaaaaaaaaaaaaaaacttgagtaacatttctctatcacaaatcac |
27017699 |
T |
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| Q |
113 |
acacccaaaccaacgctccgattaactcaccctcctagttgtatcctacagtttacatctccctatctccccattattttttatgatgaacctaaggtac |
212 |
Q |
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| T |
27017700 |
acacccaaaccaactctccaattaactcgccctcctagttgtatcctacagtttacatctccctatctccccattattttttatgatgaacctaaggtac |
27017799 |
T |
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| Q |
213 |
ccaaatcatgatatttgagataagatatgttttccaatttctgtctctg |
261 |
Q |
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| T |
27017800 |
ccaaatcatgatatttgaggtaagatatgtttttcaatttctgtctctg |
27017848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 94 - 261
Target Start/End: Original strand, 27017965 - 27018132
Alignment:
| Q |
94 |
tttctctatcacaaatcacacacccaaaccaacgctccgattaactcaccctcctagttgtatcctacagtttacatctccctatctccccattattttt |
193 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27017965 |
tttctctatcacaaatcacacacccaaaccaactctccgattaactcgccctcctagttgtatcctacagtttacatctccctatctccccattattttt |
27018064 |
T |
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| Q |
194 |
tatgatgaacctaaggtacccaaatcatgatatttgagataagatatgttttccaatttctgtctctg |
261 |
Q |
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| T |
27018065 |
tatgatgaacctaaggtacccaaatcatgatatttgaggtaagatatgttttccaatttctgtctctg |
27018132 |
T |
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