View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8903_low_9 (Length: 657)
Name: NF8903_low_9
Description: NF8903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8903_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 574; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 18 - 645
Target Start/End: Complemental strand, 42974743 - 42974112
Alignment:
| Q |
18 |
cttatagatttaaatgatttcttcagggcattatgttcttcagttggctcaaattgttaaccagagaaataagggagtcagtaatccagttataaatttt |
117 |
Q |
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| T |
42974743 |
cttatagatttaaatgatttcttcagggcattatgttcttcagttggctcaaattgttaaccagagaaataagggagtcagtaatccagttataaatttt |
42974644 |
T |
|
| Q |
118 |
cagggatttatggtaagctttttagattcatgttttaatcttttatgttcacatagacagaacacagttaacttatg-----ataatcatattctactat |
212 |
Q |
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| T |
42974643 |
cagggatttatggtaagctttttagattcatgttttaatcttttatgttcacatagacagaacacagttaacttatgttatgataatcatattctactat |
42974544 |
T |
|
| Q |
213 |
cgttgcaacaggttggaaatggtgtaattgatgattatcatgattatattggaacatttgagtactggtggacacatggtttgatttcagattccacata |
312 |
Q |
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| T |
42974543 |
cgttgcaacaggttggaaatggtgtaattgatgattatcatgattatattggaacatttgagtactggtggacgcatggtttgatttcagattccacata |
42974444 |
T |
|
| Q |
313 |
taagaagctaaacattggctgtgattttgggtccattcagcatccatcagtgcaatgtttgcaggctcttactgttgcaattaccgagcaaggaaacatc |
412 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42974443 |
taagaaactaaacattggctgtgattttgggtccattcagcatccatcagtgcaatgtttgcaggctcttactgttgcaattaccgagcaaggaaacatc |
42974344 |
T |
|
| Q |
413 |
gatggatatagcattaatacaccgccttgtaacaataccgcatcactcagaagcggcttgcatgatcgttatgtaagcctatatgctttcaactcattca |
512 |
Q |
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| T |
42974343 |
gatggatatagcattaatacaccgccttgtaacaataccgcatcactcagaagcggcttgcatgatcgttatgtaagcctatatgctttcaactcattca |
42974244 |
T |
|
| Q |
513 |
cattgcttacaaaaaccataacatatattagaagaagtattttgatgatta--tttttacttgttttcttttcctctcccttcagccttggatgtataga |
610 |
Q |
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| T |
42974243 |
cattgcttacaaaaaccataacatatatta---gaagtgttttgatgattatttttttacttgttttcttttcccctcccttcagccttggatgtataga |
42974147 |
T |
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| Q |
611 |
gcatatgatccttgtgctgaaaggtattctgatgt |
645 |
Q |
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| T |
42974146 |
gcatatgatccttgtgctgaaaggtattctgatgt |
42974112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 220 - 490
Target Start/End: Complemental strand, 42980962 - 42980692
Alignment:
| Q |
220 |
acaggttggaaatggtgtaattgatgattatcatgattatattggaacatttgagtactggtggacacatggtttgatttcagattccacatataagaag |
319 |
Q |
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| T |
42980962 |
acaggttggaaatggtgttaccgatgattatcatgattatgttgggacatttgagtactggtggacacatggtttaatttcagattctacatataggatt |
42980863 |
T |
|
| Q |
320 |
ctaaacattggctgtgattttgggtccattcagcatccatcagtgcaatgtttgcaggctcttactgttgcaattaccgagcaaggaaacatcgatggat |
419 |
Q |
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| T |
42980862 |
ctaagaattgcatgtgattttggatcatctctgcatccatcagtgcaatgttttcaggctcttagagtagcagttgctgaacaaggaaacattgatccat |
42980763 |
T |
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| Q |
420 |
atagcattaatacaccgccttgtaacaataccgcatcactcagaagcggcttgcatgatcgttatgtaagc |
490 |
Q |
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| T |
42980762 |
atagcatttatactccgccttgtaacaataccgcatcactcagaagtggcttgaacggtcgttatgtaagc |
42980692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 46 - 166
Target Start/End: Complemental strand, 42981156 - 42981036
Alignment:
| Q |
46 |
cattatgttcttcagttggctcaaattgttaaccagagaaataagggagtcagtaatccagttataaattttcagggatttatggtaagctttttagatt |
145 |
Q |
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| T |
42981156 |
cattatgttcctcaattggctcaaattgtttaccagagaaataaaggaatcaataatccaactatcaattttaagggaattatggtaagattgttaggtt |
42981057 |
T |
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| Q |
146 |
catgttttaatcttttatgtt |
166 |
Q |
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|||| |||||||||||||||| |
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| T |
42981056 |
catgctttaatcttttatgtt |
42981036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 593 - 645
Target Start/End: Complemental strand, 42980608 - 42980556
Alignment:
| Q |
593 |
cagccttggatgtatagagcatatgatccttgtgctgaaaggtattctgatgt |
645 |
Q |
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||||| ||||||| ||||||||||||||| ||| | |||||| |||||||||| |
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| T |
42980608 |
cagccatggatgtctagagcatatgatccgtgtaccgaaaggcattctgatgt |
42980556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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