View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8903_low_91 (Length: 257)
Name: NF8903_low_91
Description: NF8903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8903_low_91 |
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Alignment Details
Target: chr3 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 9266073 - 9266312
Alignment:
| Q |
18 |
actctaaaggttggctaaatctttggttagagactgactcccagttggttatgcttacttttagaaataaatattc-gttgcctgggagctaagaaacag |
116 |
Q |
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| T |
9266073 |
actctgaaggtttgctaaatctttggttagagactgactcccacttggttatgcttgcttttagaaataaatcttcagtttcctaggagctaagaaacag |
9266172 |
T |
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| Q |
117 |
atggtctaattgtatagaattgcttagtaacatgaatttcattgtaagtcacatttataggga-ggggaactcttgtgcagatggtttagctaatcttgg |
215 |
Q |
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| T |
9266173 |
atggtgtaagtgtataaaattgcttagtaacataaatttcattgtaagtagcatttatagggagggggaactcttgtgcaaatggtttatct-atcttgg |
9266271 |
T |
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| Q |
216 |
tttagctttatctgcttttgtttggttctctgctcctcctc |
256 |
Q |
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| T |
9266272 |
tttagctctatctgcttttgtttggttcccttcttctcctc |
9266312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 45661904 - 45662143
Alignment:
| Q |
18 |
actctaaaggttggctaaatctttggttagagactgactcccagttggttatgcttacttttagaaataaatattc-gttgcctgggagctaagaaacag |
116 |
Q |
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| T |
45661904 |
actctgaaggtttgctaaatctttggttagagactgactcccacttggttatgcttgcttttagaaataaatcttcagtttcctaggagctaagaaacag |
45662003 |
T |
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| Q |
117 |
atggtctaattgtatagaattgcttagtaacatgaatttcattgtaagtcacatttataggga-ggggaactcttgtgcagatggtttagctaatcttgg |
215 |
Q |
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| T |
45662004 |
atggtgtaagtgtataaaattgcttagtaacataaatttcattgtaagtagcatttatagggagggggaactcttgtgcaaatggtttatct-atcttgg |
45662102 |
T |
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| Q |
216 |
tttagctttatctgcttttgtttggttctctgctcctcctc |
256 |
Q |
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| T |
45662103 |
tttagctctatctgcttttgtttggttcccttcttctcctc |
45662143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 243
Target Start/End: Complemental strand, 9429197 - 9429102
Alignment:
| Q |
148 |
atgaatttcattgtaagtcacatttatagggaggggaactcttgtgcagatggtttagctaatcttggtttagctttatctgcttttgtttggttc |
243 |
Q |
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| T |
9429197 |
atgaatttttttgtaactcatatatatagagaagggaactcttgtgcagatagttttgctaatctagggttagctgtatcttcatttgtctggttc |
9429102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 14526431 - 14526382
Alignment:
| Q |
148 |
atgaatttcattgtaagtcacatttatagggaggggaactcttgtgcaga |
197 |
Q |
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| T |
14526431 |
atgaatttcattgttagtcacatatatggggagggaaacacttgtgcaga |
14526382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 209
Target Start/End: Complemental strand, 4102545 - 4102481
Alignment:
| Q |
145 |
aacatgaatttcattgtaagtcacatttatagggaggggaactcttgtgcagatggtttagctaa |
209 |
Q |
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| T |
4102545 |
aacatgcatttttttgttagtcatatttttagggtagggaacacttgtgcagatggtttagctaa |
4102481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 222
Target Start/End: Complemental strand, 1868401 - 1868348
Alignment:
| Q |
169 |
atttatagggaggggaactcttgtgcagatggtttagctaatcttggtttagct |
222 |
Q |
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| T |
1868401 |
atttttagggaagggaacacttgtgcagatggtttagctaacttgggtttagct |
1868348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 3839333 - 3839369
Alignment:
| Q |
172 |
tatagggaggggaactcttgtgcagatggtttagcta |
208 |
Q |
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| T |
3839333 |
tatagagaggggaacacttgtgcagatggtttagcta |
3839369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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