View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8903_low_93 (Length: 256)
Name: NF8903_low_93
Description: NF8903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8903_low_93 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 31 - 241
Target Start/End: Complemental strand, 40942522 - 40942312
Alignment:
| Q |
31 |
taaactgcactaagaggatcaaagtatgctatcctttgctgtggttttttgggtgtcaaggttgcaagactattttaaagggaggtgatgggtgatgaat |
130 |
Q |
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| T |
40942522 |
taaactgcactaagaggatcaaagtatgatatcctttgctgtggttttttgggtgtcaagattgcaagactattttaaagggaggtgatgggtgatgaat |
40942423 |
T |
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| Q |
131 |
ttcctaaacgataaaagtatagctacaatgtgaaaaaggtagaagtatgaataaaaatgttatattgaatatgaacatgacagatgcccataagttttgg |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40942422 |
ttcctaaacgataaaagtatagctacaatgtgaaaaaggtagaagtatgaataaaaatgttatattgaatatgaacatgacagatgcccataagttttgg |
40942323 |
T |
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| Q |
231 |
aatgttcatgc |
241 |
Q |
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||||||||||| |
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| T |
40942322 |
aatgttcatgc |
40942312 |
T |
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