View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8904_low_12 (Length: 381)
Name: NF8904_low_12
Description: NF8904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8904_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 35 - 242
Target Start/End: Complemental strand, 13564453 - 13564244
Alignment:
| Q |
35 |
ttgattatataaactaaaataaagataagacaatatatattcagattatccctacaaaataaagtacaccaatttattccaatatttcatatagtaattt |
134 |
Q |
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| T |
13564453 |
ttgattatataaactaaaataaagataagacaatatatattcagattatccctacaaaataaagtacaccaatttattccaatatttcatatagtaattt |
13564354 |
T |
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| Q |
135 |
ataacatgacaccgtaatacaaatagtttatag--cataaaagtaaaactatatatcttgagcagacgtacccaaagtccaaacaagcctcccataaagg |
232 |
Q |
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|||||||||||| |||||||||||||||||||| ||||||||||||||| |||| | |||||||| |||||||||| || |||||||||||||||||| |
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| T |
13564353 |
ataacatgacactgtaatacaaatagtttatagtatataaaagtaaaactacatatttggagcagacatacccaaagttcacacaagcctcccataaagg |
13564254 |
T |
|
| Q |
233 |
ttatttagct |
242 |
Q |
| |
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|||||||||| |
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| T |
13564253 |
ttatttagct |
13564244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 35 - 242
Target Start/End: Complemental strand, 13571731 - 13571519
Alignment:
| Q |
35 |
ttgattatataaactaaaataaagata--agacaatat-atattcagattatccctacaaaataaagtacaccaatttattccaatatttcatatagtaa |
131 |
Q |
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||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
13571731 |
ttgatcatataaactaaaataaagatataagacaatatgatattcagattatccctacacaagaaagtacaccaatttattccaatatttcatatagtaa |
13571632 |
T |
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| Q |
132 |
tttataacatgacaccgtaatacaaatagtttatagc--ataaaagtaaaactatatatcttgagcagacgtacccaaagtccaaacaagcctcccataa |
229 |
Q |
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||||||||||||||| ||||||||||||||||| ||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
13571631 |
tttataacatgacactgtaatacaaatagtttaaagcatataaaagtaaaagtatatatctggagcagacgtacccaaagtccaaacaagcctctcataa |
13571532 |
T |
|
| Q |
230 |
aggttatttagct |
242 |
Q |
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||||||||||||| |
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| T |
13571531 |
aggttatttagct |
13571519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 41 - 242
Target Start/End: Complemental strand, 13575276 - 13575065
Alignment:
| Q |
41 |
atataaactaaaataaagataagaca--atatatattcagattatccctacaaaataaagtacaccaatttattccaatatttcatatagtaatttataa |
138 |
Q |
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||||||||||||| |||||||||||| |||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
13575276 |
atataaactaaaacaaagataagacacaatatatattcagattatccctacacatgaaagtaaaccaatttattccaatatttcatatagtaatttataa |
13575177 |
T |
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| Q |
139 |
catgacaccgtaatacaaatagtt----tatagcataaaagtaaaactatatatcttgagcag----acgtacccaaagtccaaacaagcctcccataaa |
230 |
Q |
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| T |
13575176 |
catgacactgtaatacaaatagtttatgtatagcataaaagtaaaactacatatctggagcagatgtacatacccaaagtccaaacaagcctctcataaa |
13575077 |
T |
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| Q |
231 |
ggttatttagct |
242 |
Q |
| |
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| | |||||||| |
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| T |
13575076 |
gttaatttagct |
13575065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 309 - 377
Target Start/End: Complemental strand, 13564177 - 13564109
Alignment:
| Q |
309 |
aagacacaccagccatgttcactaagaatgatcatggaagagtactttcatgttgaggaggagaatcac |
377 |
Q |
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| T |
13564177 |
aagacacaccagccatgttcactaagaatgatcatggaagagtactttcaggttgaggaggagaatcac |
13564109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 309 - 377
Target Start/End: Complemental strand, 13575009 - 13574941
Alignment:
| Q |
309 |
aagacacaccagccatgttcactaagaatgatcatggaagagtactttcatgttgaggaggagaatcac |
377 |
Q |
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| T |
13575009 |
aagacacaccagccatgttcactaacaatgatcatggaagagtactttcaggtttaggaggataatcac |
13574941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 309 - 377
Target Start/End: Complemental strand, 13571446 - 13571378
Alignment:
| Q |
309 |
aagacacaccagccatgttcactaagaatgatcatggaagagtactttcatgttgaggaggagaatcac |
377 |
Q |
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||||||||||||||||||||| ||| |||||||||||||||||||||||| ||| ||||| |||||||| |
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| T |
13571446 |
aagacacaccagccatgttcagtaacaatgatcatggaagagtactttcaggtttaggagaagaatcac |
13571378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 309 - 381
Target Start/End: Complemental strand, 14203514 - 14203442
Alignment:
| Q |
309 |
aagacacaccagccatgttcactaagaatgatcatggaagagtactttcatgttgaggaggagaatcactacc |
381 |
Q |
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||||||||||||||||||||| ||| ||| ||||||||||||| ||||| | |||||||||||||||||| |
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| T |
14203514 |
aagacacaccagccatgttcagtaacaataatcatggaagagtgttttcaggcataggaggagaatcactacc |
14203442 |
T |
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