View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8904_low_13 (Length: 378)
Name: NF8904_low_13
Description: NF8904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8904_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 12 - 360
Target Start/End: Complemental strand, 9675469 - 9675121
Alignment:
| Q |
12 |
agagacgagattgaatatccccgaagtgcaaagcaatttcttctttgtcatannnnnnnnngaacaagcttctttgtcatttttaaactaatgtcgcaga |
111 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
9675469 |
agagacgaggttgaatatccccgaagtgcaaagcaatttcttctttgtcatatttttttttgaacaagcttctttgtcatttttaaactaatgtcgcaga |
9675370 |
T |
|
| Q |
112 |
tcactgagtcgtatgaaggtgttagatcagcttatcctggatccatcctttgtaattccatcaacacagtgtttgtctcctaaaggaatggtagctaggg |
211 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9675369 |
tcactgagtcgtatgaaggtgttagatcagtttatcctggatccatcctttgtaattccatcaacacagtgtttgtctcctaaaggaatggtagctaggg |
9675270 |
T |
|
| Q |
212 |
gaatacgcatcacaaggaatggtggctagggaaatatgcatcacaaggagtgctatatattcagatgtatcaaattgctatgtggtgtatcctcctaaat |
311 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9675269 |
gaatacgcatcacaaggaatggtggctagggaaatttgcatcacaaggagtgctatatattcagatgtatcaaattgctatgtggtgtatcctcctaaat |
9675170 |
T |
|
| Q |
312 |
gtaaaacagatttaatctctgcattttgttaagcaccaggagcatatta |
360 |
Q |
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||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
9675169 |
gtaaaacagatttaatctctgcattttgttaagcatcaggggcatatta |
9675121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 225 - 343
Target Start/End: Complemental strand, 9683145 - 9683027
Alignment:
| Q |
225 |
aaggaatggtggctagggaaatatgcatcacaaggagtgctatatattcagatgtatcaaattgctatgtggtgtatcctcctaaatgtaaaacagattt |
324 |
Q |
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| T |
9683145 |
aaggaatggttgctaggggaatatgcatcacaaggagttccataaagccagatgtatcaaattgctctgtggtttatcctcctagatgtaagaaagtttt |
9683046 |
T |
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| Q |
325 |
aatctctgcattttgttaa |
343 |
Q |
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||||||||||||||||||| |
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| T |
9683045 |
aatctctgcattttgttaa |
9683027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 82 - 179
Target Start/End: Complemental strand, 10212927 - 10212834
Alignment:
| Q |
82 |
tctttgtcatttttaaactaatgtcgcagatcactgagtcgtatgaaggtgttagatcagcttatcctggatccatcctttgtaattccatcaacaca |
179 |
Q |
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|||||||||||||||||| ||||| |||| | ||||||| | | |||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
10212927 |
tctttgtcatttttaaacgaatgttgcaggtgactgagttgcgtaaaggtgttagatcagcttat----gatccatcctttgtaattccatcaacaca |
10212834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 189
Target Start/End: Original strand, 10105348 - 10105454
Alignment:
| Q |
82 |
tctttgtcatttttaaactaatgtcgcagatcactgagtcgtatgaaggtgttagatcagcttatcctggatccatcctttgtaattccatcaacacagt |
181 |
Q |
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||||||||||||||||| ||||| |||| | ||||||| || | |||||| |||||||||||| |||||||| ||||| ||||| ||||||||||| | |
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| T |
10105348 |
tctttgtcatttttaaatgaatgttgcaggtgactgagttgtgtacaggtgtcagatcagcttat-ctggatccttccttcgtaataccatcaacacaat |
10105446 |
T |
|
| Q |
182 |
gtttgtct |
189 |
Q |
| |
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||||||| |
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| T |
10105447 |
ctttgtct |
10105454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 274 - 346
Target Start/End: Complemental strand, 10210477 - 10210401
Alignment:
| Q |
274 |
agatgtatcaaa-ttgctatgtggtgtatcctcct---aaatgtaaaacagatttaatctctgcattttgttaagca |
346 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||| | |||||| |||||||||||||| ||||||||||||||| |
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| T |
10210477 |
agatgtatcaaaattgctctgtggtgtatcctcctcttagatgtaagacagatttaatctcggcattttgttaagca |
10210401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 273 - 346
Target Start/End: Complemental strand, 10216271 - 10216198
Alignment:
| Q |
273 |
cagatgtatcaaattgctatgtggtgtatcctcctaaatgtaaaacagatttaatctctgcattttgttaagca |
346 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| || |||||| ||| ||| ||| |||||||||||||||| |
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|
| T |
10216271 |
cagatgtatcaaattgctctgtggtgtatcctcttagatgtaagacaaattaaattaatgcattttgttaagca |
10216198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 346
Target Start/End: Original strand, 10108670 - 10108724
Alignment:
| Q |
292 |
tgtggtgtatcctcctaaatgtaaaacagatttaatctctgcattttgttaagca |
346 |
Q |
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|
|||||||||||||| || |||||| ||||||| |||||||||||||| ||||||| |
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| T |
10108670 |
tgtggtgtatcctcttagatgtaagacagattaaatctctgcattttcttaagca |
10108724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 10212968 - 10212918
Alignment:
| Q |
12 |
agagacgagattgaatatccccgaagtgcaaagcaatttcttctttgtcat |
62 |
Q |
| |
|
||||| ||| |||||||||||| ||||||||||||||||| |||||||||| |
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|
| T |
10212968 |
agagatgaggttgaatatcccccaagtgcaaagcaatttcatctttgtcat |
10212918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 9683366 - 9683320
Alignment:
| Q |
12 |
agagacgagattgaatatccccgaagtgcaaagcaatttcttctttgt |
59 |
Q |
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||||||||| |||||||||||| ||||||||||||||||| ||||||| |
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| T |
9683366 |
agagacgaggttgaatatcccc-aagtgcaaagcaatttcatctttgt |
9683320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 10105307 - 10105357
Alignment:
| Q |
12 |
agagacgagattgaatatccccgaagtgcaaagcaatttcttctttgtcat |
62 |
Q |
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|
||||| ||| ||||||||||| ||||||||||||||||| |||||||||| |
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| T |
10105307 |
agagatgaggttgaatatcccgcaagtgcaaagcaatttcatctttgtcat |
10105357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 229
Target Start/End: Complemental strand, 9683147 - 9683110
Alignment:
| Q |
192 |
taaaggaatggtagctaggggaatacgcatcacaagga |
229 |
Q |
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|||||||||||| |||||||||||| |||||||||||| |
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| T |
9683147 |
taaaggaatggttgctaggggaatatgcatcacaagga |
9683110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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