View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8904_low_16 (Length: 366)
Name: NF8904_low_16
Description: NF8904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8904_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 15 - 353
Target Start/End: Complemental strand, 36747222 - 36746876
Alignment:
| Q |
15 |
agaaacaacggaaaatannnnnnnatttcatttattttgttcaaagggaccatgtttgtgggaagaaaattccaaacagcattatcatgcaagcaacagt |
114 |
Q |
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| T |
36747222 |
agaaacaacggaaaatatttttttatttcatttaatttgttcaaagggaccatgtttgtgggaagaaaattccaaacagcattatcatgcaagcaacagt |
36747123 |
T |
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| Q |
115 |
tgcccataaaatttgtgaagttcataataataatttgtctttattttatggcttaaacggtttggttgtgagagaaaaagatcctgataatctaaagttt |
214 |
Q |
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| T |
36747122 |
tgcccataaaatttatgaagttcataataataatttgtctttattttatggcttaaatggtttggtcgtgagag-aaaagatcctgataatctaaagttt |
36747024 |
T |
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| Q |
215 |
aatggagagatatatactgataaattaagtaagatcaaatattgct---------attcaaattcacttcaactatttgtatttgaccgaactttgttaa |
305 |
Q |
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| T |
36747023 |
aatggagagatatataccgataaattaagtaagatcaaatattgctcttaccaaaattcaaattcacttcaactatttgtatttgaccgaactttgttaa |
36746924 |
T |
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| Q |
306 |
cgaccatttttatgttctaaaaatttttgattccatctctctgatgtc |
353 |
Q |
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| T |
36746923 |
cgaccatttttatgctctaaaaatttttgattccatttctctgatgtc |
36746876 |
T |
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