View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8904_low_17 (Length: 359)
Name: NF8904_low_17
Description: NF8904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8904_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 330; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 16 - 349
Target Start/End: Complemental strand, 916423 - 916090
Alignment:
| Q |
16 |
acatcagcggtaggagtatggaggaaaacgatgaagggaaaccgaaagaaccaaatgaaaagggctttttgtcaagagaaaggaagaaaagcaagtatct |
115 |
Q |
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| T |
916423 |
acatcagcggtaggagtatggaggaaaacgatgaagggaaaccaaaagaaccaaatgaaaagggctttttgtcaagagaaaggaagaaaagcaagtatct |
916324 |
T |
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| Q |
116 |
gtcgcctcctttcactacttcaatcagagactttgtgaagggaagaggttctggctcgctttctcctcgagtttcaaagtataacattgaggtatttcaa |
215 |
Q |
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| T |
916323 |
gtcgcctcctttcactacttcaatcagagactttgtgaagggaagaggttctggctcgctttctcctcgagtttcaaagtataacattgaggtatttcaa |
916224 |
T |
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| Q |
216 |
gagttggaacttttggttagcttgaatcaccaaacaccagatgatgagaaagagacccttgacgatttgatcgatgaaaggcgtgagatttctgttggcg |
315 |
Q |
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| T |
916223 |
gagttggaacttttggttagcttgaatcaccaaacaccagatgatgagaaagagacccttgacgatttgatcgatgaaaggcgtgagatttctgttggcg |
916124 |
T |
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| Q |
316 |
aatttgtttggggaaagattaagagtcgtctgtg |
349 |
Q |
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| T |
916123 |
aatttgtttggggaaagattaagagtcgtctgtg |
916090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 38 - 277
Target Start/End: Original strand, 1001286 - 1001525
Alignment:
| Q |
38 |
ggaaaacgatgaagggaaaccgaaagaaccaaatgaaaagggctttttgtcaagagaaaggaagaaaagcaagtatctgtcgcctcctttcactacttca |
137 |
Q |
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| T |
1001286 |
ggaaaacgatgaagggaagccgaaagaaccaaatgaaaaaggttttttgtcaagagaaaggaagaaaagcaagtatttgtcgcctcctttcactacttca |
1001385 |
T |
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| Q |
138 |
atcagagactttgtgaagggaagaggttctggctcgctttctcctcgagtttcaaagtataacattgaggtatttcaagagttggaacttttggttagct |
237 |
Q |
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| T |
1001386 |
atcagagactttgtgaagggaagaggttctggcccgctttctcctcgagtttcaaagtataacagtgaggcatttcaagagtttgaattttctgttagct |
1001485 |
T |
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| Q |
238 |
tgaatcaccaaacaccagatgatgagaaagagacccttga |
277 |
Q |
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| T |
1001486 |
tgaatcaccaaacaccagatgatgagaaagagactcttga |
1001525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 274 - 349
Target Start/End: Complemental strand, 917452 - 917377
Alignment:
| Q |
274 |
ttgacgatttgatcgatgaaaggcgtgagatttctgttggcgaatttgtttggggaaagattaagagtcgtctgtg |
349 |
Q |
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| T |
917452 |
ttgaggatttgatcgatgaaaggtgtgacttttctgttggtgattttgtttggggaaagattaagagtcatctgtg |
917377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 274 - 342
Target Start/End: Original strand, 1000235 - 1000303
Alignment:
| Q |
274 |
ttgacgatttgatcgatgaaaggcgtgagatttctgttggcgaatttgtttggggaaagattaagagtc |
342 |
Q |
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| T |
1000235 |
ttgacgatttgattgatgaaaggtgtgacttttctgttggagattttgtttggggaaagattaagagtc |
1000303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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