View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8904_low_20 (Length: 350)
Name: NF8904_low_20
Description: NF8904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8904_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 14 - 232
Target Start/End: Original strand, 31490834 - 31491053
Alignment:
| Q |
14 |
ttcacaaaagaccaatgttatatatagcgaagaaaaacatagcaaacagaccacggatgaaatacaaccattggtttattggttgtttgactgaatgcat |
113 |
Q |
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| T |
31490834 |
ttcacaaaagaccaatgctatatatagcgaagaaaaacatagtgagcagaccacgaatgaaatacaaccattggtttattggttgtttgactgaatgcat |
31490933 |
T |
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| Q |
114 |
ggcttgatggaagtaaaagggaccta-tgcaaatgcttgttagctgtcgttgcgatatatatcattttccttcgcaaaaagttcggttcgactagttagg |
212 |
Q |
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| T |
31490934 |
ggattgatggaagtaaaagggacctactgcaaatgcttgttaggtgtcgtcacgatatatatcattttccttcgcaaaaagttcggttcgactagttagg |
31491033 |
T |
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| Q |
213 |
ttcaactaatttcaacctaa |
232 |
Q |
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| T |
31491034 |
ttcaattaatttcaacctaa |
31491053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 231 - 331
Target Start/End: Original strand, 31491082 - 31491182
Alignment:
| Q |
231 |
aaaaagtttactagagactcaattgcccatatcaacattttgatcaacactatggcccaatacttaaaaacaaacaatttaaacaaataagttgatagag |
330 |
Q |
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| T |
31491082 |
aaaaagtttactagagactcaattgcccatatcaacattttgatcaacactatggcccaatacttaaaaacaaacaatttaaacaaataagttgatagag |
31491181 |
T |
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| Q |
331 |
g |
331 |
Q |
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| T |
31491182 |
g |
31491182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 110
Target Start/End: Complemental strand, 52545018 - 52544929
Alignment:
| Q |
20 |
aaagaccaatgttatatatagcgaagaaaaacatagcaaacagaccacggatgaaatacaaccattggtttattggttgtttgactgaatg |
110 |
Q |
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| T |
52545018 |
aaagaacaatgctatatacagcgaagaaaaacattgcga-cacaccacgaatgaaatacaaccattgaattattggctatttgactgaatg |
52544929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 259 - 331
Target Start/End: Original strand, 50445730 - 50445809
Alignment:
| Q |
259 |
atatcaacattttgatcaacactatggcccaatact-------taaaaacaaacaatttaaacaaataagttgatagagg |
331 |
Q |
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| T |
50445730 |
atatcaacattttgagcaacaatatggcccaatacttcaaaaataaaaaaacacaatttaaacaaataaattgatagagg |
50445809 |
T |
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