View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8904_low_21 (Length: 300)
Name: NF8904_low_21
Description: NF8904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8904_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 9 - 297
Target Start/End: Original strand, 43983859 - 43984147
Alignment:
| Q |
9 |
tacaatccttcaattgatccaaaataaaatgacttttattaaacataaacaatgccaaatacaaaagtataattaatccaagtaataagagatttgagct |
108 |
Q |
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| T |
43983859 |
tacaatccttcaattgatccaaaataaaatgacttttattaaacataaacaatgccaaatacaaaagtataattgatccaagtaataagagatttaagct |
43983958 |
T |
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| Q |
109 |
ccttaaacctaaggttcagagtttaattattgactctcacatatttcccaacgaaattaattactgctaagcggtgaaaatttcttaccaatatcgtgct |
208 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
43983959 |
ccttaaacataaggttcagagtttaattattgactctcacatatttcccaacgaaattaattactgctaagcggtgaaaatttcgtaccaatatcgtgct |
43984058 |
T |
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| Q |
209 |
aaaccaaaaaagatgtagcaaaatcagacacggcatcttatgcagatatcactcaattctcttggactcctactcttctctgctcctcc |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43984059 |
aaaccaaaaaagatgtagcaaaatcagacacggcatcttatgcagatatcactcaattctcttggactcctactcttctcttctcctcc |
43984147 |
T |
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