View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8904_low_29 (Length: 235)
Name: NF8904_low_29
Description: NF8904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8904_low_29 |
 | |
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| [»] scaffold0002 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 53573215 - 53573423
Alignment:
| Q |
15 |
gacatcacctaatcaaacaacaaagaaatagtacaataattgtaaaaggggcttatgtaaagcaacacctaattaaaaattcatgataactctttaataa |
114 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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|
| T |
53573215 |
gacagcacctaatcaaacaacaaagaaatagtacaataattgtaaaaggggcttatgtaaagcaacacctaattaaaaattcatgataacacttaaataa |
53573314 |
T |
|
| Q |
115 |
ctaatcaaaaatagcagctaat--nnnnnnnnnctcatgtcaacactgaatttgtatcataagttcttcaacatcttgatacaactatgagcctcaattc |
212 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||| |
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|
| T |
53573315 |
ctaatcaaaaatagcagctaataaaaaaaaaaactcatgtcaacactgaatttgtatcataagctcttcaacatctcgatacaactatgggcctcaattc |
53573414 |
T |
|
| Q |
213 |
aagtctctg |
221 |
Q |
| |
|
||||||||| |
|
|
| T |
53573415 |
aagtctctg |
53573423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 52053604 - 52053813
Alignment:
| Q |
15 |
gacatcacctaatcaaacaacaaagaaatagtacaataattgtaaaaggggcttatgtaaagcaacacctaattaaaaattcatgataactctttaataa |
114 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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|
| T |
52053604 |
gacagcacctaatcaaacaacaaagaaatagtacaataattgtaaaaggggcttatgtaaagcaacacctaattaaaaattcatgataacacttaaataa |
52053703 |
T |
|
| Q |
115 |
ctaatcaaaaatagcagctaat---nnnnnnnnnctcatgtcaacactgaatttgtatcataagttcttcaacatcttgatacaactatgagcctcaatt |
211 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||| |
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|
| T |
52053704 |
ctaatcaaaaatagcagctaataaaaaaaaaaaactcatgtcaacactgaatttgtatcataagctcttcaacatctcgatacaactatgggcctcaatt |
52053803 |
T |
|
| Q |
212 |
caagtctctg |
221 |
Q |
| |
|
|||||||||| |
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|
| T |
52053804 |
caagtctctg |
52053813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 30198360 - 30198568
Alignment:
| Q |
15 |
gacatcacctaatcaaacaacaaagaaatagtacaataattgtaaaaggggcttatgtaaagcaacacctaattaaaaattcatgataactctttaataa |
114 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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|
| T |
30198360 |
gacagcacctaatcaaacaacaaagaaatagtacaataattgtaaaaggggcttatgtaaagcaacacctaattaaaaattcatgataacacttaaataa |
30198459 |
T |
|
| Q |
115 |
ctaatcaaaaatagcagctaat--nnnnnnnnnctcatgtcaacactgaatttgtatcataagttcttcaacatcttgatacaactatgagcctcaattc |
212 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||| |
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|
| T |
30198460 |
ctaatcaaaaatagcagctaataaaaaaaaaaactcatgtcaacactgaatttgtatcataagctcttcaacatctcgatacaactatgggcctcaattc |
30198559 |
T |
|
| Q |
213 |
aagtctctg |
221 |
Q |
| |
|
||||||||| |
|
|
| T |
30198560 |
aagtctctg |
30198568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 464195 - 464404
Alignment:
| Q |
15 |
gacatcacctaatcaaacaacaaagaaatagtacaataattgtaaaaggggcttatgtaaagcaacacctaattaaaaattcatgataactctttaataa |
114 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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|
| T |
464195 |
gacagcacctaatcaaacaacaaagaaatagtacaataattgtaaaaggggcttatgtaaagcaacacctaattaaaaattcatgataacacttaaataa |
464294 |
T |
|
| Q |
115 |
ctaatcaaaaatagcagctaat---nnnnnnnnnctcatgtcaacactgaatttgtatcataagttcttcaacatcttgatacaactatgagcctcaatt |
211 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||| |
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|
| T |
464295 |
ctaatcaaaaatagcagctaataaaaaaaaaaaactcatgtcaacactgaatttgtatcataagctcttcaacatctcgatacaactatgggcctcaatt |
464394 |
T |
|
| Q |
212 |
caagtctctg |
221 |
Q |
| |
|
|||||||||| |
|
|
| T |
464395 |
caagtctctg |
464404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 35898725 - 35898516
Alignment:
| Q |
15 |
gacatcacctaatcaaacaacaaagaaatagtacaataattgtaaaaggggcttatgtaaagcaacacctaattaaaaattcatgataactctttaataa |
114 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
35898725 |
gacagcacctaatcaaacaacaaagaaatagtacaataattgtaaaaggggcttatgtaaagcaacacctaattaaaaattcatgataacacttaaataa |
35898626 |
T |
|
| Q |
115 |
ctaatcaaaaatagcagctaat---nnnnnnnnnctcatgtcaacactgaatttgtatcataagttcttcaacatcttgatacaactatgagcctcaatt |
211 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||| |
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|
| T |
35898625 |
ctaatcaaaaatagcagctaataaaaaaaaaaaactcatgtcaacactgaatttgtatcataagctcttcaacatctcgatacaactatgggcctcaatt |
35898526 |
T |
|
| Q |
212 |
caagtctctg |
221 |
Q |
| |
|
|||||||||| |
|
|
| T |
35898525 |
caagtctctg |
35898516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 31356264 - 31356055
Alignment:
| Q |
15 |
gacatcacctaatcaaacaacaaagaaatagtacaataattgtaaaaggggcttatgtaaagcaacacctaattaaaaattcatgataactctttaataa |
114 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
31356264 |
gacagcacctaatcaaacaacaaagaaatagtacaataattgtaaaaggggcttatgtaaagcaacacctaattaaaaattcatgataacacttaaataa |
31356165 |
T |
|
| Q |
115 |
ctaatcaaaaatagcagctaat---nnnnnnnnnctcatgtcaacactgaatttgtatcataagttcttcaacatcttgatacaactatgagcctcaatt |
211 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||| |
|
|
| T |
31356164 |
ctaatcaaaaatagcagctaataaaaaaaaaaaactcatgtcaacactgaatttgtatcataagctcttcaacatctcgatacaactatgggcctcaatt |
31356065 |
T |
|
| Q |
212 |
caagtctctg |
221 |
Q |
| |
|
|||||||||| |
|
|
| T |
31356064 |
caagtctctg |
31356055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 15 - 218
Target Start/End: Complemental strand, 16993554 - 16993344
Alignment:
| Q |
15 |
gacatcacctaatcaaacaacaaagaaatagtacaataattgtaaaaggggcttatgtaaagcaacacctaattaaaaattcatgataactctttaataa |
114 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
16993554 |
gacagcacctaatcaaacaacaaagaaatagtacaataattgtaaaaggggcttatgtaaagcaacacctaattaaaaattcatgataacacttaaataa |
16993455 |
T |
|
| Q |
115 |
ctaatcaaaaatagcagctaat-------nnnnnnnnnctcatgtcaacactgaatttgtatcataagttcttcaacatcttgatacaactatgagcctc |
207 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||| |
|
|
| T |
16993454 |
ctaatcaaaaatagcagctaataaaaaaaaaaaaaaaactcatgtcaacactgaatttgtatcataagctcttcaacatctcgatacaactatgggcctc |
16993355 |
T |
|
| Q |
208 |
aattcaagtct |
218 |
Q |
| |
|
||||||||||| |
|
|
| T |
16993354 |
aattcaagtct |
16993344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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