View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8904_low_35 (Length: 213)
Name: NF8904_low_35
Description: NF8904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8904_low_35 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 52711837 - 52712050
Alignment:
| Q |
1 |
taataataatggtggttcttaacctcttccaaatccaatgcttttttgttctacaagtgttggcacaaaaaagaaagatagcattggtggtggaaatggt |
100 |
Q |
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| T |
52711837 |
taataataatggtggttcttaccctcttccaaatccaatgcttttttgttctacaagtgtgggcacaaaaaagaaagatagcattggtggtggaaatggt |
52711936 |
T |
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| Q |
101 |
agtgg-acctaatatgttttgttgaataattttgtaacacaagtataggaaatttgaaatgcaggtttgatagagaacatgagtgatagtcgcagagaaa |
199 |
Q |
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| T |
52711937 |
agtgggacctaatatgttttgttgaataattttgtaacacaagtataggaaatttgaaatgcaggtttgatggagaacatgagtgatagtcgaagagaaa |
52712036 |
T |
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| Q |
200 |
gagagtttgaaatt |
213 |
Q |
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|||| ||||||||| |
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| T |
52712037 |
gagactttgaaatt |
52712050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 5 - 113
Target Start/End: Original strand, 52717152 - 52717260
Alignment:
| Q |
5 |
aataatggtggttcttaacctcttccaaatccaatgcttttttgttctacaagtgttggcacaaaaaagaaagatagcattggtggtggaaatggtagtg |
104 |
Q |
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||||||||||||||||| |||| ||||||||| ||||||| | |||||||||||| ||||||||| |||||||||||||| || ||||||| ||||| || |
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| T |
52717152 |
aataatggtggttcttaccctcctccaaatcctatgctttctggttctacaagtgctggcacaaagaagaaagatagcatgggcggtggaagtggtaatg |
52717251 |
T |
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| Q |
105 |
gacctaata |
113 |
Q |
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| T |
52717252 |
gacctaata |
52717260 |
T |
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