View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8904_low_5 (Length: 617)
Name: NF8904_low_5
Description: NF8904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8904_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 17 - 603
Target Start/End: Complemental strand, 50550325 - 50549738
Alignment:
| Q |
17 |
aggtacaaggtggcttatgagggatagcatctgatttgtagtggttgtgggtgttatggacatgttactcctaatttcaccacaacggcggctatgaaaa |
116 |
Q |
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| T |
50550325 |
aggtacaaggtggcttatgagggattacatctgatttgtagtggttgtgggtgttatggacatgttactcataatttcaccacaacggcggctatgaaaa |
50550226 |
T |
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| Q |
117 |
caattgtcagcactccgattgttgacagtgttcaggtcacccaaaatacagctgcaagcgctatggtacaacaagatcacagtaatgaaacggttgtcaa |
216 |
Q |
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| T |
50550225 |
caattgtcggcactccgattgttgacagtgttcaggtcacccaaaatacagctgcaagcgctatggtacaataagatcacagtaatgaaacggttgtcaa |
50550126 |
T |
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| Q |
217 |
tgagtcaactaatcttcctaaatccttggaaaatatctcacaggacctacaatctggtgaagaaacgcatggtgattggttggtagttagtgataggacg |
316 |
Q |
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| T |
50550125 |
tgagtcaactaatcttcctaaatccttggaaaatatctcacatgacctacaatctggtgaagaaacgcatggtgattggttggtagttagtgataggagg |
50550026 |
T |
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| Q |
317 |
agaaacaataggaaacaatttaatgctaatcatggaaaaaatattcctataataaaggggtataataaattctctcctctatc-------------aagg |
403 |
Q |
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| T |
50550025 |
a----------gaaacaatttaatgctaatcatggaaaaaatattcc-------------tataataaattctctcctctatcaatcaacgaagataagg |
50549949 |
T |
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| Q |
404 |
accaattaacctttcatgtagggtcaaatagttcaagtgggaag----catataccatgggataagg----nnnnnnngaaaagaaagatacgtgaagac |
495 |
Q |
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| T |
50549948 |
accaattgacctttcatgtagggtgaaatatttcaagtgggaagcatacatataccatgggataaggaaaaaagaaaagaaaagaaagatacgtgaagac |
50549849 |
T |
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| Q |
496 |
cccataaagaacctcaatgaagtttctccttctatgactgacgacaac---aataaaccaaatagtgggaaaaaggttatgaaggaacaagtaatggttt |
592 |
Q |
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| T |
50549848 |
cccataaagaacctcaatgaagtttctccttctatgactgacgacaacaataataaaccaaatagtgggaaaaaggttatgaaggaacaagtaatggttt |
50549749 |
T |
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