View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8904_low_8 (Length: 529)
Name: NF8904_low_8
Description: NF8904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8904_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 157; Significance: 3e-83; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 186 - 363
Target Start/End: Complemental strand, 35191254 - 35191073
Alignment:
| Q |
186 |
atgaaacaaaacagttggcacttcttaggtacttggacagttacaaaaagatacagaaagctagctaaaggctaggtgtttttgtcaaaacccttacttt |
285 |
Q |
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| T |
35191254 |
atgaaacaaaacagttggcacttcttaggtacttggacagttacaaaaagatacagaaagctagcctaaggctaggtgtttttgtcaaaacccttacttt |
35191155 |
T |
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| Q |
286 |
tgttcttcaaatcattcacactataccttatttctgttatttctatgttaggctgttggaaa----tcaataactaaaccaa |
363 |
Q |
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| T |
35191154 |
tgttcttcaaatcattcacactataccttatttctgttatttctatgttaggctgttggaaatgcttcaataactaaaccaa |
35191073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 11 - 150
Target Start/End: Complemental strand, 35191429 - 35191290
Alignment:
| Q |
11 |
aagcagagacaaaagtggtggagacaagaaagtagtaaaagacacggaagacaaggagaaggggtggnnnnnnncattctatttctagcattggacttat |
110 |
Q |
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| T |
35191429 |
aagcagagacaaaagtggtggagacaagaaagtagtaaaagacacggaagacaaggagaaggggtggttttttccattctatttctagcattggacttat |
35191330 |
T |
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| Q |
111 |
taatcactatcctatcctataacaatgcacaccaaaacac |
150 |
Q |
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| T |
35191329 |
taatcactatcctatcctataacaatgcacaccaaaacac |
35191290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 402 - 512
Target Start/End: Complemental strand, 35191033 - 35190923
Alignment:
| Q |
402 |
tagttctccgccattttagaaacgagtcttacataaagtaatgaaattcacacgaattttatctaataaacgagggaatattgaacaaaaaatattagat |
501 |
Q |
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| T |
35191033 |
tagttctctgtcattttagaaacgagtcttacagaaagtaacgaaattcacacaaattttatctaataaacgagggagtattgaacaaaaaatattagat |
35190934 |
T |
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| Q |
502 |
tgaatcttgtt |
512 |
Q |
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| T |
35190933 |
tgaatcttgtt |
35190923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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