View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8904_low_9 (Length: 396)
Name: NF8904_low_9
Description: NF8904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8904_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 6e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 190 - 362
Target Start/End: Original strand, 56311922 - 56312094
Alignment:
| Q |
190 |
cacgagcatgacgtggttatgccagggtttcgtttccatccaactgaagaagaacttgtagagttctaccttcgccgtaaggtcgagggaaaacgtttca |
289 |
Q |
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| T |
56311922 |
cacgagcatgacgtggttatgccagggtttcgtttccatccaactgaagaagaacttgtagagttctaccttcgccgtaaggtcgagggaaaacgtttca |
56312021 |
T |
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| Q |
290 |
acgttgagcttattacttttctcgatctttatcgctatgacccttgggaacttcctggtatatatttatttat |
362 |
Q |
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| T |
56312022 |
acgttgagcttattacttttctcgatctttatcgctatgacccttgggaacttcctggtatatatttatttat |
56312094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 23 - 168
Target Start/End: Original strand, 56311749 - 56311894
Alignment:
| Q |
23 |
tgttgttgttagttagttagagagagtggatggcaatagcagcagcaacatcatcacctaacatgagcagcatgagcttgagtcacgaagatggaacttc |
122 |
Q |
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| T |
56311749 |
tgttgttgttagttagttagagagagtggatggcaatagcagcagcaacatcatcacctaacatgagcagcatgagcttgagtcacgaagatggaacttc |
56311848 |
T |
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| Q |
123 |
taacgataatattaacaaaggagctacagctacagttacagtagta |
168 |
Q |
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| T |
56311849 |
taacgataatattaacaaaggagctacagctacagttacagtagta |
56311894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 248
Target Start/End: Original strand, 8449724 - 8449761
Alignment:
| Q |
211 |
ccagggtttcgtttccatccaactgaagaagaacttgt |
248 |
Q |
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| T |
8449724 |
ccagggtttcgtttccacccaactgatgaagaacttgt |
8449761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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