View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_high_15 (Length: 308)
Name: NF8905A_high_15
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_high_15 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 8 - 308
Target Start/End: Complemental strand, 31718475 - 31718182
Alignment:
| Q |
8 |
atttcatatttctttaacttcggcaaccataaaagattgaaacaagagccaatgcaacagccaaattttacaacatttccaaaccaaagagttattgaag |
107 |
Q |
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| T |
31718475 |
atttcatatttctttaacttcggcaaccataaaagattgaaacaagagccaatgcaacagccaaattttacaacatttccaaaccaaagagttattgaag |
31718376 |
T |
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| Q |
108 |
ttcaatatcatactgagggtggctaggcacatggaaatcgatcgattcacttttaaggcattcatctgatgcatcttgacacgaatttcccgcttcatca |
207 |
Q |
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| T |
31718375 |
ttcaatatcatactgggggtggctaggcacatggaaat----cgattcactcttaaggcattcatctgatgcatattgacacgaatttcccgcttcatca |
31718280 |
T |
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| Q |
208 |
agatcttcccggtcatcagtaagatcatcttcatcattcccactgttcagctaaagatgggaagcaagaaaacaaacagccaataatatactcattgcaa |
307 |
Q |
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| T |
31718279 |
agatcttcccggtcatcagtaagatcatcttcatcattcccactgttcagctaaagatgggaagcaagaaaacaaacagcc---aatatactcattgcaa |
31718183 |
T |
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