View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_high_21 (Length: 251)
Name: NF8905A_high_21
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_high_21 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 7089788 - 7090017
Alignment:
| Q |
17 |
gacatcaaatcaaatacataaataaagtgaaaagnnnnnnnnnnttacctgcttcagtgatatagggaaagtgatccaaccacactgttcaagtgtcttc |
116 |
Q |
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| T |
7089788 |
gacatcaaatcaaatacataaataaagtgaaaa-----aaaaaattacctgcttcagtgatatagggaaagtgatccaaccacactgttcaagtgtcttc |
7089882 |
T |
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| Q |
117 |
acaacaccctttgttatgtctctccataatctacaaactgaggcacaagctacaagtgcgcggcgagatggccaagaggtttcactagcttccacccttt |
216 |
Q |
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| T |
7089883 |
acaacaccctttgttatgtctctccataatctacaaactgaggcacaagctacaagtgcacggcgagatggccaagaggtttcactagcttccacccttt |
7089982 |
T |
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| Q |
217 |
gaattatgtctaatagtaactcgggaggtaaatta |
251 |
Q |
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| T |
7089983 |
gaattatgtctaatagtaactcgggaggtaaatta |
7090017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 61 - 247
Target Start/End: Original strand, 7669653 - 7669839
Alignment:
| Q |
61 |
ttacctgcttcagtgatatagggaaagtgatccaaccacactgttcaagtgtcttcacaacaccctttgttatgtctctccataatctacaaactgaggc |
160 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
7669653 |
ttacctgcttcaatgatatagggaaagtgatccaaccacactgttcaagtgtcttcacaacaccctttgttatgtctctccacaatctacaaactgaggc |
7669752 |
T |
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| Q |
161 |
acaagctacaagtgcgcggcgagatggccaagaggtttcactagcttccaccctttgaattatgtctaatagtaactcgggaggtaa |
247 |
Q |
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| T |
7669753 |
acaagctacaagtgcgcggagagatggccaagtggtttcactagcttccaccctttgaattatgtctaatagtaactcaggaggtaa |
7669839 |
T |
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