View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8905A_low_103 (Length: 291)

Name: NF8905A_low_103
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8905A_low_103
NF8905A_low_103
[»] chr5 (2 HSPs)
chr5 (4-290)||(12078931-12079217)
chr5 (40-122)||(26118426-26118508)
[»] chr1 (2 HSPs)
chr1 (59-270)||(21616786-21617008)
chr1 (43-94)||(18209419-18209470)
[»] chr3 (9 HSPs)
chr3 (139-290)||(10738142-10738293)
chr3 (197-270)||(7920729-7920802)
chr3 (140-259)||(12411805-12411923)
chr3 (43-93)||(23345079-23345129)
chr3 (41-138)||(19643321-19643418)
chr3 (195-259)||(19643477-19643537)
chr3 (43-91)||(54284791-54284839)
chr3 (14-56)||(20050924-20050966)
chr3 (44-111)||(7920589-7920656)
[»] chr2 (6 HSPs)
chr2 (14-276)||(26816012-26816292)
chr2 (58-122)||(14867470-14867533)
chr2 (200-290)||(27744510-27744600)
chr2 (41-134)||(22524614-22524707)
chr2 (67-136)||(27940220-27940290)
chr2 (79-128)||(19497336-19497385)
[»] scaffold0606 (2 HSPs)
scaffold0606 (195-291)||(5570-5667)
scaffold0606 (68-130)||(5733-5795)
[»] chr6 (7 HSPs)
chr6 (139-259)||(12399078-12399199)
chr6 (139-259)||(12394578-12394697)
chr6 (139-235)||(27988893-27988989)
chr6 (40-140)||(12394712-12394813)
chr6 (144-259)||(14079915-14080030)
chr6 (18-94)||(27989049-27989125)
chr6 (246-291)||(16740252-16740297)
[»] chr7 (8 HSPs)
chr7 (43-132)||(9065714-9065803)
chr7 (74-132)||(15304823-15304881)
chr7 (1-132)||(19417458-19417588)
chr7 (40-136)||(1878057-1878153)
chr7 (68-152)||(24811001-24811084)
chr7 (250-290)||(24811146-24811186)
chr7 (67-142)||(9396738-9396814)
chr7 (73-132)||(3778387-3778446)
[»] chr8 (4 HSPs)
chr8 (40-117)||(24497937-24498014)
chr8 (59-132)||(17937560-17937633)
chr8 (40-122)||(17689605-17689687)
chr8 (67-124)||(17879889-17879946)
[»] chr4 (1 HSPs)
chr4 (41-142)||(10328174-10328275)
[»] scaffold0012 (1 HSPs)
scaffold0012 (45-122)||(173591-173668)


Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 4 - 290
Target Start/End: Complemental strand, 12079217 - 12078931
Alignment:
Q  4 gcagaaacaaagacaaaaattatacaatgtcgtatgaaagtattggttatgaatgaacaaatctagagcaaagaattttcaagagaagctatgttgcaag 103  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12079217 gcagaaccatagacaaaaattatacaatgtcgtatgaaagtattggttatgaatgaacaaatctagagcaaagaattttcaagagaagctatgttgcaag 12079118  T
Q  104 ccagaatctgaagaagtcaaactctgaagactacccagactctgaagatcaaccaaaagctggacctcagactctagaaacctgactatgaatagctgaa 203  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  12079117 ccagaatctgaagaagtcaaactctgaagactacccagactctgtagatcaaccagaagctggacctcagactctggaaacctgactatgaatagctgaa 12079018  T
Q  204 gaacaaaggagcagaagcattggatgtcaagcgttgatagttctgaagatcaagcacaatggttctggaagtgttagaaggtcaatg 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12079017 gaacaaaggagcagaagcattggatgtcaagcgttgatagttctgaagatcaagcacaatggttctggaagtgttagaaggtcaatg 12078931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 122
Target Start/End: Original strand, 26118426 - 26118508
Alignment:
Q  40 aaagtattggttatgaatgaacaaatctagagcaaa-gaattttcaagagaagctatgttgcaagccagaatctgaagaagtca 122  Q
    |||||||||||| || | |||||| | ||||||||| |||||||||||| |||| | |||||||| || |||||||||||||||    
T  26118426 aaagtattggttctggaagaacaatt-tagagcaaaagaattttcaagaaaagccaagttgcaagtcataatctgaagaagtca 26118508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 59 - 270
Target Start/End: Complemental strand, 21617008 - 21616786
Alignment:
Q  59 aacaaatctagagcaaagaattttcaagagaagctatgttgcaagccagaatctgaagaagtcaaactctgaagactacc------------cagactct 146  Q
    ||||||| ||||| |||||||||||||||||| ||| ||| |||| |||||||||||||||||| ||||||| |||||||            |||||| |    
T  21617008 aacaaatgtagagaaaagaattttcaagagaaactaagtt-caagtcagaatctgaagaagtcagactctgatgactaccagtcgatgcagtcagactgt 21616910  T
Q  147 gaagatcaaccaaaagctggacctcagactctagaaacctgactatgaatagctgaagaacaaaggagcagaagcattggatgtcaagcgttgatagttc 246  Q
    |||||||| ||| || |||||||||||||||| ||| ||  ||| || || |||||||| |||||||||||||||| ||||||||||||  |||||||||    
T  21616909 gaagatcatccagaaactggacctcagactctggaagccaaactctggattgctgaagaccaaaggagcagaagcaatggatgtcaagctatgatagttc 21616810  T
Q  247 tgaagatcaagcacaatggttctg 270  Q
     |||||||||||| | ||||||||    
T  21616809 agaagatcaagcatagtggttctg 21616786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 94
Target Start/End: Complemental strand, 18209470 - 18209419
Alignment:
Q  43 gtattggttatgaatgaacaaatctagagcaaagaattttcaagagaagcta 94  Q
    |||||||||||||| |||||||  || ||||||||| |||||||||||||||    
T  18209470 gtattggttatgaaagaacaaaggtatagcaaagaactttcaagagaagcta 18209419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 139 - 290
Target Start/End: Complemental strand, 10738293 - 10738142
Alignment:
Q  139 cagactctgaagatcaaccaaaagctggacctcagactctagaaacctgactatgaata-gctgaagaacaaaggagcagaagcattggatgtcaagcgt 237  Q
    |||||||||||||||||||| ||||||||||||||||| | |||  | |||| |  ||| || |||||||||||||||| ||||||||||||||||||      
T  10738293 cagactctgaagatcaaccagaagctggacctcagactttggaagtcagactttagataagcagaagaacaaaggagcataagcattggatgtcaagcta 10738194  T
Q  238 tgatagttctgaagatcaagcacaatggttctggaagtgttagaaggtcaatg 290  Q
    |||||||| |||| |||||| | ||||||| ||| ||||||||||||||||||    
T  10738193 tgatagttatgaaaatcaagtataatggttttgg-agtgttagaaggtcaatg 10738142  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 197 - 270
Target Start/End: Original strand, 7920729 - 7920802
Alignment:
Q  197 agctgaagaacaaaggagcagaagcattggatgtcaagcgttgatagttctgaagatcaagcacaatggttctg 270  Q
    |||||||||||||||||| ||||||||||||||| |||| ||| || ||| |||| ||||||||||||||||||    
T  7920729 agctgaagaacaaaggagtagaagcattggatgttaagctttggtatttccgaaggtcaagcacaatggttctg 7920802  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 140 - 259
Target Start/End: Original strand, 12411805 - 12411923
Alignment:
Q  140 agactctgaagatcaaccaaaagctggacctcagactctagaaacctgactatgaatagctgaagaacaaaggagcagaagcattggatgtcaagcgttg 239  Q
    ||||||||||| | | ||| ||||||||||||||||||||||| ||  ||| |  ||||||||||| |||||| ||| ||| ||||||||||||||  ||    
T  12411805 agactctgaagttaacccagaagctggacctcagactctagaagccaaactcttgatagctgaagaccaaaggtgcataagtattggatgtcaagc-atg 12411903  T
Q  240 atagttctgaagatcaagca 259  Q
     |||||||||||| ||||||    
T  12411904 gtagttctgaagaccaagca 12411923  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 43 - 93
Target Start/End: Original strand, 23345079 - 23345129
Alignment:
Q  43 gtattggttatgaatgaacaaatctagagcaaagaattttcaagagaagct 93  Q
    ||||||||| |||| |||||||| |||||||||||||||||||||||||||    
T  23345079 gtattggttttgaaagaacaaatatagagcaaagaattttcaagagaagct 23345129  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 138
Target Start/End: Original strand, 19643321 - 19643418
Alignment:
Q  41 aagtattggttatgaatgaacaaatctagagcaaagaattttcaagagaagctatgttgcaagccagaatctgaagaagtcaaactctgaagactacc 138  Q
    |||||||| || |||| ||||||||  || ||||  ||||||||||||||||   |||||||| |||| ||||||||||||| ||||||| |||||||    
T  19643321 aagtattgattttgaaagaacaaatgaagggcaattaattttcaagagaagcctagttgcaagtcagactctgaagaagtcagactctgacgactacc 19643418  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 259
Target Start/End: Original strand, 19643477 - 19643537
Alignment:
Q  195 atagctgaagaacaaaggagcagaagcattggatgtcaagcgttgatagttctgaagatcaagca 259  Q
    ||||||||||||||||||||||||| || |||||||| |    ||||||||||||||||||||||    
T  19643477 atagctgaagaacaaaggagcagaaacaatggatgtcta----tgatagttctgaagatcaagca 19643537  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 54284791 - 54284839
Alignment:
Q  43 gtattggttatgaatgaacaaatctagagcaaagaattttcaagagaag 91  Q
    ||||||||| |||| |||||||| || ||||||||||||||||||||||    
T  54284791 gtattggttttgaaagaacaaatgtaaagcaaagaattttcaagagaag 54284839  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 20050966 - 20050924
Alignment:
Q  14 agacaaaaattatacaatgtcgtatgaaagtattggttatgaa 56  Q
    ||||||||||||||||||||  ||| |||||||||||||||||    
T  20050966 agacaaaaattatacaatgttttattaaagtattggttatgaa 20050924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 111
Target Start/End: Original strand, 7920589 - 7920656
Alignment:
Q  44 tattggttatgaatgaacaaatcta-gagcaaagaattttcaagagaagctatgttgcaagccagaatc 111  Q
    ||||||||||||| ||||||||  | ||||||||| |||||| ||||||||||||| |||| |||||||    
T  7920589 tattggttatgaaagaacaaattgaagagcaaaga-ttttcatgagaagctatgtttcaagtcagaatc 7920656  T

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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 276
Target Start/End: Complemental strand, 26816292 - 26816012
Alignment:
Q  14 agacaaaaattatacaatgtcgtatgaaagtattggttatgaatgaacaaatcta-gagcaaagaattttcaagagaagctatgttgcaagccagaatct 112  Q
    ||||| ||| ||||||||||| ||| |||||||||||| |||| ||||||||  | ||||||||| ||||||||||||  | ||||||||  |  ||| |    
T  26816292 agacacaaagtatacaatgtcttattaaagtattggttctgaaagaacaaattgaagagcaaaga-ttttcaagagaaagtttgttgcaaatctaaattt 26816194  T
Q  113 gaagaagtcaaactctgaagactacccagac-----------------tctgaagatcaaccaaaagctggacctcagactctaga-aacctgactatga 194  Q
    |||||| ||||||||||| ||||||||||||                 ||||||||||||| | ||| ||||||||| ||||| ||   || |||| ||     
T  26816193 gaagaaatcaaactctgatgactacccagactctggaagttgtaagactctgaagatcaactagaagttggacctcaaactctggacccccagactctgg 26816094  T
Q  195 atagctgaagaacaaaggagcagaagcattggatgtcaagcgttgatagttctgaagatcaagcacaatggttctggaagtg 276  Q
    | |||||| || |||||||||| ||||||||||||| |||| ||||||||||| |||||||| |||||||||||||||||||    
T  26816093 aaagctgatgagcaaaggagcataagcattggatgttaagctttgatagttctaaagatcaatcacaatggttctggaagtg 26816012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 122
Target Start/End: Complemental strand, 14867533 - 14867470
Alignment:
Q  58 gaacaaatctagagcaaagaattttcaagagaagctatgttgcaagccagaatctgaagaagtca 122  Q
    |||||||| ||||||||||||||||||||||||| || ||| |||| ||||||||||||||||||    
T  14867533 gaacaaatgtagagcaaagaattttcaagagaagttaagtt-caagtcagaatctgaagaagtca 14867470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 200 - 290
Target Start/End: Original strand, 27744510 - 27744600
Alignment:
Q  200 tgaagaacaaaggagcagaagcattggatgtcaagcgttgatagttctgaagatcaagcacaatggttctggaagtgttagaaggtcaatg 290  Q
    |||||| |||||||||| ||||||||||||||||   || || ||| ||| ||||||||||||||||| ||||| ||| ||||| ||||||    
T  27744510 tgaagaccaaaggagcaaaagcattggatgtcaaattttaatggttatgacgatcaagcacaatggttttggaaatgtcagaagatcaatg 27744600  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 134
Target Start/End: Original strand, 22524614 - 22524707
Alignment:
Q  41 aagtattggttatgaatgaacaaatctagagcaaagaa-ttttcaagagaagctatgttgcaagccagaatctgaagaagtcaaactctgaagac 134  Q
    ||||||||||| || | |||||||| ||||||||| || |||||||| |||| |  |||||||| |||||||||||||||||| | |||||||||    
T  22524614 aagtattggttctggaagaacaaat-tagagcaaataaattttcaagggaagtttagttgcaagtcagaatctgaagaagtcagagtctgaagac 22524707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 136
Target Start/End: Complemental strand, 27940290 - 27940220
Alignment:
Q  67 tagagcaaagaa-ttttcaagagaagctatgttgcaagccagaatctgaagaagtcaaactctgaagacta 136  Q
    |||||||||| | |||||||| ||||||  |||||||| |||||||||||||||||| | |||||||||||    
T  27940290 tagagcaaaggagttttcaagggaagcttagttgcaagtcagaatctgaagaagtcagagtctgaagacta 27940220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 19497336 - 19497385
Alignment:
Q  79 ttttcaagagaagctatgttgcaagccagaatctgaagaagtcaaactct 128  Q
    |||||||||||||||| ||  ||||||||||||| ||||||||| |||||    
T  19497336 ttttcaagagaagctaagtctcaagccagaatctaaagaagtcagactct 19497385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0606 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: scaffold0606
Description:

Target: scaffold0606; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 195 - 291
Target Start/End: Complemental strand, 5667 - 5570
Alignment:
Q  195 atagctgaagaacaaaggagcagaagcattggatgtcaagcgttg--atagttctgaagatcaagcacaatggttctggaagtgttagaaggtcaatga 291  Q
    |||||||||||||||||||||||||||||||||||||||||  ||  ||| |||||||||||||||| |||| |||||| ||||| |||||||||||||    
T  5667 atagctgaagaacaaaggagcagaagcattggatgtcaagctatgatataattctgaagatcaagcataatgtttctgg-agtgtcagaaggtcaatga 5570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0606; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 130
Target Start/End: Complemental strand, 5795 - 5733
Alignment:
Q  68 agagcaaagaattttcaagagaagctatgttgcaagccagaatctgaagaagtcaaactctga 130  Q
    ||||||||||||||||||||||||| | |||||||| || ||||||||||||||| |||||||    
T  5795 agagcaaagaattttcaagagaagccaagttgcaagtcaaaatctgaagaagtcagactctga 5733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 139 - 259
Target Start/End: Complemental strand, 12399199 - 12399078
Alignment:
Q  139 cagactctgaagatcaaccaaaagctggacctcagactctagaaacctgactatgaata-gctgaagaacaaaggagcagaagcattggatgtcaagcgt 237  Q
    |||||||||| ||||| ||| ||||||||||||||| |||  || || |||| || ||| |||||||||| |||||| |||||||||||||||||| |      
T  12399199 cagactctgatgatcacccagaagctggacctcagaatctgaaagccagactctggataagctgaagaaccaaggagaagaagcattggatgtcaaacta 12399100  T
Q  238 tgatagttctgaagatcaagca 259  Q
    ||||| ||||||||||||||||    
T  12399099 tgataattctgaagatcaagca 12399078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 139 - 259
Target Start/End: Complemental strand, 12394697 - 12394578
Alignment:
Q  139 cagactctgaagatcaaccaaaagctggacctcagactctagaaacctgactatgaatagctgaagaacaaaggagcagaagcattggatgtcaagcgtt 238  Q
    |||||||| | ||||| ||| ||||||||||||||| |||| || ||  |||  ||  |||||||| ||||||||| ||||||||||||||||||    |    
T  12394697 cagactctaatgatcacccagaagctggacctcagaatctaaaagccacactc-gataagctgaagtacaaaggaggagaagcattggatgtcaaattat 12394599  T
Q  239 gatagttctgaagatcaagca 259  Q
    |||||||||||||||||||||    
T  12394598 gatagttctgaagatcaagca 12394578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 139 - 235
Target Start/End: Complemental strand, 27988989 - 27988893
Alignment:
Q  139 cagactctgaagatcaaccaaaagctggacctcagactctagaaacctgactatgaatagctgaagaacaaaggagcagaagcattggatgtcaagc 235  Q
    |||| ||||||||||| |||  | |||||||||||||||| ||| || |||| || ||||||||| | |||||| ||||||| | ||||||||||||    
T  27988989 cagattctgaagatcacccatcaactggacctcagactctggaagccagactttggatagctgaaaaccaaaggtgcagaagtaatggatgtcaagc 27988893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 140
Target Start/End: Complemental strand, 12394813 - 12394712
Alignment:
Q  40 aaagtattggttatgaatgaacaaatctagagcaaa-gaattttcaagagaagctatgttgcaagccagaatctgaagaagtcaaactctgaagactacc 138  Q
    ||||||||||||||||| |||||||| |||||||||    |||| ||||||||| | ||| |||| |||||||||||||| ||  ||||| | |||||||    
T  12394813 aaagtattggttatgaaagaacaaatttagagcaaattttttttgaagagaagccaagtttcaagtcagaatctgaagaaatcggactctaatgactacc 12394714  T
Q  139 ca 140  Q
    ||    
T  12394713 ca 12394712  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 259
Target Start/End: Complemental strand, 14080030 - 14079915
Alignment:
Q  144 tctgaagatcaaccaaaagctggacctcagactctagaaac-ctgactatgaatagctgaagaacaaaggagcagaagcattggatgtcaagcgttgata 242  Q
    ||||||||||| ||| ||| || || ||||||||| ||||| | |||| || ||| || ||||||||||||||||||  | ||||||||||||  || ||    
T  14080030 tctgaagatcacccagaagatgaacatcagactct-gaaactcagactctggataactaaagaacaaaggagcagaattaatggatgtcaagcaatggta 14079932  T
Q  243 gttctgaagatcaagca 259  Q
    | |||||||||||||||    
T  14079931 gctctgaagatcaagca 14079915  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 27989125 - 27989049
Alignment:
Q  18 aaaaattatacaatgtcgtatgaaagtattggttatgaatgaacaaatctagagcaaagaattttcaagagaagcta 94  Q
    ||||||| |||| |||| |||  |||||||| ||  ||| |||||||| |||||||||| |||||||||||||||||    
T  27989125 aaaaattgtacattgtcttattcaagtattgtttcggaaagaacaaatgtagagcaaagtattttcaagagaagcta 27989049  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 291
Target Start/End: Complemental strand, 16740297 - 16740252
Alignment:
Q  246 ctgaagatcaagcacaatggttctggaagtgttagaaggtcaatga 291  Q
    ||||||||||||||||||||||||| |  ||| |||||||||||||    
T  16740297 ctgaagatcaagcacaatggttctgaagatgtcagaaggtcaatga 16740252  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 43 - 132
Target Start/End: Complemental strand, 9065803 - 9065714
Alignment:
Q  43 gtattggttatgaatgaacaaatctagagcaaagaattttcaagagaagctatgttgcaagccagaatctgaagaagtcaaactctgaag 132  Q
    |||||| || |||| |||||||| ||||| ||||||||||||||||||| || ||  ||||||||||||||||| ||||| |||||||||    
T  9065803 gtattgattttgaaagaacaaatgtagagaaaagaattttcaagagaagttaagtatcaagccagaatctgaaggagtcagactctgaag 9065714  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 132
Target Start/End: Complemental strand, 15304881 - 15304823
Alignment:
Q  74 aagaattttcaagagaagctatgttgcaagccagaatctgaagaagtcaaactctgaag 132  Q
    ||||||||||| |||||||||||||||||| |||||||||||| ||||| |||||||||    
T  15304881 aagaattttcatgagaagctatgttgcaagtcagaatctgaaggagtcagactctgaag 15304823  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 19417588 - 19417458
Alignment:
Q  1 tgtgcagaaacaaagacaaaaattatacaatgtcgtatgaaagtattggttatgaatgaacaaatctagagcaaagaattttcaagagaagctatgttgc 100  Q
    ||||||| | || ||||||||||| ||||||||| ||   | |||||||||||| | |||||||| || ||||||||||||||||||||| ||| ||  |    
T  19417588 tgtgcaggaccatagacaaaaatt-tacaatgtcttaatcatgtattggttatggaagaacaaatgtaaagcaaagaattttcaagagaacctaagtatc 19417490  T
Q  101 aagccagaatctgaagaagtcaaactctgaag 132  Q
    || ||||||| ||||| ||||| | |||||||    
T  19417489 aaaccagaatatgaaggagtcagattctgaag 19417458  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 136
Target Start/End: Original strand, 1878057 - 1878153
Alignment:
Q  40 aaagtattggttatgaatgaacaaatctagagcaaa-gaattttcaagagaagctatgttgcaagccagaatctgaagaagtcaaactctgaagacta 136  Q
    |||||||||||| |||| |||||| |  |||||||| ||||||||||||||||||  |||||||| |||||| |||| |||||| | |||||||||||    
T  1878057 aaagtattggttctgaaagaacaattg-agagcaaaagaattttcaagagaagcttagttgcaagtcagaatttgaaaaagtcagagtctgaagacta 1878153  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 68 - 152
Target Start/End: Original strand, 24811001 - 24811084
Alignment:
Q  68 agagcaaagaattttcaagagaagctatgttgcaagccagaatctgaagaagtcaaactctgaagactacccagactctgaagat 152  Q
    |||||||||| |||||| |||||||||||||||||| |||||||| ||||||||| ||| | |||   | |||||||||||||||    
T  24811001 agagcaaaga-ttttcatgagaagctatgttgcaagtcagaatctaaagaagtcagactttaaaggtcatccagactctgaagat 24811084  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 250 - 290
Target Start/End: Original strand, 24811146 - 24811186
Alignment:
Q  250 agatcaagcacaatggttctggaagtgttagaaggtcaatg 290  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  24811146 agatcaagtacaatggttctggaagtgttagaaggtcaatg 24811186  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 142
Target Start/End: Original strand, 9396738 - 9396814
Alignment:
Q  67 tagagcaaag-aattttcaagagaagctatgttgcaagccagaatctgaagaagtcaaactctgaagactacccaga 142  Q
    |||||||||| |||||||||| ||| ||  ||||||||  ||||||||||||||||| | ||||||||||| |||||    
T  9396738 tagagcaaaggaattttcaagggaaacttagttgcaagttagaatctgaagaagtcagagtctgaagactatccaga 9396814  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 132
Target Start/End: Original strand, 3778387 - 3778446
Alignment:
Q  73 aaagaattttcaagagaagctatgttgcaagccagaatctgaagaagtcaaactctgaag 132  Q
    |||||||||||||||||||| | |||||||| | |||||| ||||||||| | |||||||    
T  3778387 aaagaattttcaagagaagccaagttgcaagtccgaatctaaagaagtcagagtctgaag 3778446  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 117
Target Start/End: Original strand, 24497937 - 24498014
Alignment:
Q  40 aaagtattggttatgaatgaacaaatctagagcaaa-gaattttcaagagaagctatgttgcaagccagaatctgaaga 117  Q
    |||||||||||| || | |||||||| ||||||||| ||||||||||| ||||| |||||||||| |||||||||||||    
T  24497937 aaagtattggttctggaagaacaaat-tagagcaaatgaattttcaagcgaagccatgttgcaagtcagaatctgaaga 24498014  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 132
Target Start/End: Complemental strand, 17937633 - 17937560
Alignment:
Q  59 aacaaatctagagcaaagaattttcaagagaagctatgttgcaagccagaatctgaagaagtcaaactctgaag 132  Q
    ||||||| ||||| ||||||||||||||||||| || ||   ||| |||||||||||| ||||| |||||||||    
T  17937633 aacaaatgtagagaaaagaattttcaagagaagttaagtataaagtcagaatctgaaggagtcagactctgaag 17937560  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 122
Target Start/End: Complemental strand, 17689687 - 17689605
Alignment:
Q  40 aaagtattggttatgaatgaacaaatctagagcaaag-aattttcaagagaagctatgttgcaagccagaatctgaagaagtca 122  Q
    |||||||||||| || |  ||||||| |||||||||| |||||||||| ||||||  |||||||| |||||||| |||||||||    
T  17689687 aaagtattggttctggaacaacaaat-tagagcaaaggaattttcaagggaagcttagttgcaagtcagaatctaaagaagtca 17689605  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 17879946 - 17879889
Alignment:
Q  67 tagagcaaagaattttcaagagaagctatgttgcaagccagaatctgaagaagtcaaa 124  Q
    ||||||||||||||||||||||||| ||  |  ||| ||||||| |||||||||||||    
T  17879946 tagagcaaagaattttcaagagaagataaatatcaaaccagaatatgaagaagtcaaa 17879889  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 142
Target Start/End: Original strand, 10328174 - 10328275
Alignment:
Q  41 aagtattggttatgaatgaacaaatctagagcaaagaattttcaagagaagctatgttgcaagccagaatctgaagaagtcaaactctgaagactaccca 140  Q
    ||||||||||| | || |||||| |   |||||| |||||| ||| |||||| | |||||||| |||||||| ||||||||| ||||||| |||||||||    
T  10328174 aagtattggttctcaaagaacaattaatgagcaaggaatttacaaaagaagccaagttgcaagtcagaatctaaagaagtcagactctgatgactaccca 10328273  T
Q  141 ga 142  Q
    ||    
T  10328274 ga 10328275  T

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Target: scaffold0012 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 122
Target Start/End: Complemental strand, 173668 - 173591
Alignment:
Q  45 attggttatgaatgaacaaatctagagcaaaga-attttcaagagaagctatgttgcaagccagaatctgaagaagtca 122  Q
    |||||||||| | |||||| | ||||||||||| |||||||||||||   | |||||||| ||||||||||||||||||    
T  173668 attggttatggaagaacaatt-tagagcaaagatattttcaagagaaatcaagttgcaagtcagaatctgaagaagtca 173591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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