View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8905A_low_104 (Length: 290)

Name: NF8905A_low_104
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8905A_low_104
NF8905A_low_104
[»] chr3 (4 HSPs)
chr3 (16-273)||(11897148-11897405)
chr3 (16-274)||(26432588-26432846)
chr3 (117-201)||(23424570-23424654)
chr3 (159-208)||(49149802-49149851)
[»] chr8 (3 HSPs)
chr8 (16-273)||(23132475-23132732)
chr8 (117-267)||(26587230-26587380)
chr8 (21-179)||(14760016-14760174)
[»] chr1 (5 HSPs)
chr1 (16-273)||(20284849-20285106)
chr1 (108-275)||(50236550-50236717)
chr1 (120-275)||(50451893-50452048)
chr1 (162-271)||(1524969-1525078)
chr1 (159-217)||(23465403-23465461)
[»] chr2 (11 HSPs)
chr2 (16-273)||(14653570-14653827)
chr2 (123-274)||(35135219-35135370)
chr2 (123-274)||(40328174-40328325)
chr2 (120-269)||(26791322-26791471)
chr2 (108-217)||(16322502-16322611)
chr2 (123-274)||(3779048-3779199)
chr2 (120-265)||(177504-177649)
chr2 (120-196)||(573266-573342)
chr2 (135-273)||(19265413-19265551)
chr2 (115-201)||(42403209-42403295)
chr2 (120-171)||(35062956-35063007)
[»] scaffold0036 (1 HSPs)
scaffold0036 (120-210)||(75967-76057)
[»] chr5 (3 HSPs)
chr5 (120-226)||(32874457-32874563)
chr5 (120-274)||(7817131-7817285)
chr5 (115-217)||(6641008-6641110)
[»] chr4 (3 HSPs)
chr4 (123-274)||(54477407-54477558)
chr4 (117-220)||(46784469-46784572)
chr4 (120-201)||(3881787-3881868)
[»] chr6 (4 HSPs)
chr6 (117-274)||(24990660-24990817)
chr6 (117-274)||(24893833-24893990)
chr6 (120-227)||(27852952-27853059)
chr6 (111-217)||(13599639-13599745)
[»] chr7 (4 HSPs)
chr7 (114-274)||(16769956-16770116)
chr7 (118-217)||(27781628-27781727)
chr7 (123-193)||(1353794-1353864)
chr7 (120-265)||(1579159-1579304)


Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 16 - 273
Target Start/End: Complemental strand, 11897405 - 11897148
Alignment:
Q  16 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttatagcagc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||    
T  11897405 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttggacgactgctgagttgatagtagc 11897306  T
Q  116 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11897305 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttc 11897206  T
Q  216 caaagtatagagtaactaggagaagctacgcaatgcatgatgagtttgatggtgatgt 273  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  11897205 caaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgt 11897148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 16 - 274
Target Start/End: Original strand, 26432588 - 26432846
Alignment:
Q  16 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttatagcagc 115  Q
    ||||||||| |||||| ||||| ||||||||||||||||||||||| |||||||| || ||| ||||||||||||||| ||| || ||||| ||||||||    
T  26432588 ggacatcatttgcaaaaaggaggtgggataaatgcggccccgtaggagtgatttgaatcggttcccatcttccttgggtgacggcggagttgatagcagc 26432687  T
Q  116 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttc 215  Q
     || |||||||||||||||| |||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||||||| ||||||||||||||| |||    
T  26432688 ggatagcttttccatgcaaatgatgaagagataaggggacaatggatcaccttgtcggagaccatgagaaggtttgaaagacggcaacttgttcccattc 26432787  T
Q  216 caaagtatagagtaactaggagaagctacgcaatgcatgatgagtttgatggtgatgtc 274  Q
    ||||||||||||||  | |  ||||  || |||||||||||||||||||||||||||||    
T  26432788 caaagtatagagtagtttgatgaagagacacaatgcatgatgagtttgatggtgatgtc 26432846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 117 - 201
Target Start/End: Complemental strand, 23424654 - 23424570
Alignment:
Q  117 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggca 201  Q
    ||||||||||||||||| || |||||||||||||| || | ||| |||||||||| ||| ||||| |  ||||||||||| ||||    
T  23424654 gaaagcttttccatgcatagtatgaaaagataaggagagagcgggtcaccttgtctgagaccatgtgtgggcttgaaagggggca 23424570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 49149802 - 49149851
Alignment:
Q  159 ggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgtt 208  Q
    |||||||||||||| || ||||||| |||||||||| ||||||| |||||    
T  49149802 ggatcaccttgtcgaagaccatgagtaggcttgaaatgcggcaatttgtt 49149851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 16 - 273
Target Start/End: Original strand, 23132475 - 23132732
Alignment:
Q  16 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttatagcagc 115  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  23132475 ggacatcatctgcaaataggagatgggataaatggggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagc 23132574  T
Q  116 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttc 215  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23132575 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacgtatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttc 23132674  T
Q  216 caaagtatagagtaactaggagaagctacgcaatgcatgatgagtttgatggtgatgt 273  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  23132675 caaagtatagagtaactaggagaagctacgcaatgcatgatgaacttgatggtgatgt 23132732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 117 - 267
Target Start/End: Complemental strand, 26587380 - 26587230
Alignment:
Q  117 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttcc 216  Q
    ||||| || ||||| ||||| ||||| || || || ||||| || |||||||||||||||||||||| ||||||||| || ||||| ||||| || || |    
T  26587380 gaaagtttctccatacaaagaatgaagaggtagggagacaatgggtcaccttgtcggaggccatgagtaggcttgaaggggggcaatttgttaccatttc 26587281  T
Q  217 aaagtatagagtaactaggagaagctacgcaatgcatgatgagtttgatgg 267  Q
    |||| || | | |  |||  ||||  |||||||||||||||||||||||||    
T  26587280 aaaggatggtgaaggtagatgaagtgacgcaatgcatgatgagtttgatgg 26587230  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 179
Target Start/End: Complemental strand, 14760174 - 14760016
Alignment:
Q  21 tcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttatagcagctgaaa 120  Q
    |||||||||||||| || || ||||  || |||||||||   |||||||| |  ||| |||| ||||||||   ||| ||||| |||||||||   || |    
T  14760174 tcatctgcaaatagtaggtgagatatctggggccccgtatttgtgatttgaaccggttcccaacttccttgattgaccgctgaatttatagcaatagaga 14760075  T
Q  121 gcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggcca 179  Q
    |||||||||| ||||| ||||| || || |||||||||||||| ||||| || ||||||    
T  14760074 gcttttccatacaaagaatgaagaggtatggggacaacggatctccttggcgaaggcca 14760016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 16 - 273
Target Start/End: Complemental strand, 20285106 - 20284849
Alignment:
Q  16 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttatagcagc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  20285106 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagc 20285007  T
Q  116 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||   |||||||||    
T  20285006 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcgcaggccatgagaaggctcgaaaggcggcaaccctttcccgttc 20284907  T
Q  216 caaagtatagagtaactaggagaagctacgcaatgcatgatgagtttgatggtgatgt 273  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  20284906 caaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgt 20284849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 108 - 275
Target Start/End: Original strand, 50236550 - 50236717
Alignment:
Q  108 atagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgt 207  Q
    |||||| |||| || || ||||| || | ||||||||| |||||||| | ||||||||||| || ||||||||||| |||||||||||| |||| |||||    
T  50236550 atagcaactgatagtttctccatacacaagatgaaaaggtaaggggaaagcggatcaccttatctgaggccatgagtaggcttgaaagggggcatcttgt 50236649  T
Q  208 tcccgttccaaagtatagagtaactaggagaagctacgcaatgcatgatgagtttgatggtgatgtcc 275  Q
    |||||||||| |  ||||||||  | || || |  || |||||||||||||||||| |||||||||||    
T  50236650 tcccgttccataagatagagtaggtgggtgaggagacacaatgcatgatgagtttggtggtgatgtcc 50236717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 120 - 275
Target Start/End: Complemental strand, 50452048 - 50451893
Alignment:
Q  120 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaa 219  Q
    ||||| ||||| ||||| ||||| || ||||| || | |||||||||||||||||||||||| | ||| |||||| ||||||  ||||| || ||||| |    
T  50452048 agcttctccatacaaagaatgaagaggtaaggagaaagcggatcaccttgtcggaggccatgtgtaggtttgaaatgcggcattttgttaccattccata 50451949  T
Q  220 gtatagagtaactaggagaagct-acgcaatgcatgatgagtttgatggtgatgtcc 275  Q
      |||||| || | |||| || | || ||||||||||| ||||||||||||||||||    
T  50451948 agatagagaaagt-ggaggaggtgacacaatgcatgataagtttgatggtgatgtcc 50451893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 271
Target Start/End: Complemental strand, 1525078 - 1524969
Alignment:
Q  162 tcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaagtatagagtaactaggagaagctacgcaatgcatgatgagtt 261  Q
    |||||||| || || || || |||||||||||||| || || ||||| || |||||||| |||||| |   |||||| |  || ||||||||||||||||    
T  1525078 tcaccttgccgaagaccgtgggaaggcttgaaaggaggtaatttgttaccattccaaagaatagagaaggcaggagaggtaacacaatgcatgatgagtt 1524979  T
Q  262 tgatggtgat 271  Q
    ||||||||||    
T  1524978 tgatggtgat 1524969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 217
Target Start/End: Complemental strand, 23465461 - 23465403
Alignment:
Q  159 ggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttcca 217  Q
    |||||||||||||| || ||||||| |||||||||| ||||||| ||||| || |||||    
T  23465461 ggatcaccttgtcgaagaccatgagtaggcttgaaatgcggcaatttgttaccattcca 23465403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 16 - 273
Target Start/End: Original strand, 14653570 - 14653827
Alignment:
Q  16 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttatagcagc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  14653570 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggagtgatttggatgggtgcccatcttccttgggcaactgctgagtttatagcagc 14653669  T
Q  116 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttc 215  Q
     || ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||    
T  14653670 ggatagcttttccatgcaaaggatgaaaaaataaggggacaacggatcaccttgttggaggccatgagaaggcttgaaaggcggcaacttgttcccattc 14653769  T
Q  216 caaagtatagagtaactaggagaagctacgcaatgcatgatgagtttgatggtgatgt 273  Q
    ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  14653770 caaagtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtgatgt 14653827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 123 - 274
Target Start/End: Original strand, 35135219 - 35135370
Alignment:
Q  123 ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaagta 222  Q
    |||||||| || ||||||||||||||||| |||||||| |||||||| || || ||||||| |||||||||||| |  | |||||| || ||||| |  |    
T  35135219 ttttccatacataggatgaaaagataaggagacaacgggtcaccttgacgaagtccatgagtaggcttgaaaggagagagcttgtttccattccataaaa 35135318  T
Q  223 tagagtaactaggagaagctacgcaatgcatgatgagtttgatggtgatgtc 274  Q
    | ||||| || || || |  || ||||||||||||||||||||||| |||||    
T  35135319 ttgagtagcttggtgaggtaacacaatgcatgatgagtttgatggtaatgtc 35135370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 123 - 274
Target Start/End: Complemental strand, 40328325 - 40328174
Alignment:
Q  123 ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaagta 222  Q
    |||||||| || ||||||||||||||||| |||||||| |||||||| || || ||||||| |||||||||||| |  | |||||| || ||||| |  |    
T  40328325 ttttccatacataggatgaaaagataaggagacaacgggtcaccttgacgaagtccatgagtaggcttgaaaggagaaagcttgtttccattccataaaa 40328226  T
Q  223 tagagtaactaggagaagctacgcaatgcatgatgagtttgatggtgatgtc 274  Q
    | ||||| || || || |  || ||||||||||||||||||||||| |||||    
T  40328225 ttgagtagctcggtgaggtaacacaatgcatgatgagtttgatggtaatgtc 40328174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 120 - 269
Target Start/End: Complemental strand, 26791471 - 26791322
Alignment:
Q  120 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaa 219  Q
    ||||| ||||||||||| || ||||| || ||||| | ||||||||| || | ||||||||||| ||||| |||||| |||||| | || || |||||||    
T  26791471 agcttctccatgcaaagaataaaaaggtacggggaaagcggatcaccctgcctgaggccatgagtaggctcgaaaggaggcaacctatttccattccaaa 26791372  T
Q  220 gtatagagtaactaggagaagctacgcaatgcatgatgagtttgatggtg 269  Q
    | |||||| | || |  ||||  ||||||||||||||||| |||||||||    
T  26791371 gaatagagaagctggatgaagtaacgcaatgcatgatgagcttgatggtg 26791322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 108 - 217
Target Start/End: Complemental strand, 16322611 - 16322502
Alignment:
Q  108 atagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgt 207  Q
    |||||| | ||||| |||||||||||||| |||||||| || || || | ||| ||||||||||| ||||||||||  ||||||||||| |||| |||||    
T  16322611 atagcaacagaaagtttttccatgcaaagtatgaaaaggtacggagaaagcgggtcaccttgtcgaaggccatgagtgggcttgaaaggaggcatcttgt 16322512  T
Q  208 tcccgttcca 217  Q
    | || |||||    
T  16322511 ttccattcca 16322502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 274
Target Start/End: Original strand, 3779048 - 3779199
Alignment:
Q  123 ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaagta 222  Q
    |||||||| || ||||||||||||||||| |||| ||| |||||||| || || ||||||| |||||||||||| |  | |||||| || ||||| |  |    
T  3779048 ttttccatacagaggatgaaaagataaggagacagcgggtcaccttgacgaagtccatgagtaggcttgaaaggagagagcttgtttccattccataaca 3779147  T
Q  223 tagagtaactaggagaagctacgcaatgcatgatgagtttgatggtgatgtc 274  Q
      ||||| || || || |  || ||||||||||||||||||||||| |||||    
T  3779148 atgagtagcttggtgaggtaacacaatgcatgatgagtttgatggtaatgtc 3779199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 265
Target Start/End: Complemental strand, 177649 - 177504
Alignment:
Q  120 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaa 219  Q
    |||||||||||||| | |||||| || ||||| ||||| || ||||||||||  || ||||||| |||||||| ||| ||| | ||||| || |||||||    
T  177649 agcttttccatgcagatgatgaataggtaaggagacaaagggtcaccttgtcttagaccatgagtaggcttgataggaggccatttgtttccattccaaa 177550  T
Q  220 gtatagagtaactaggagaagctacgcaatgcatgatgagtttgat 265  Q
    | | |||| |  | | |||||  || ||||||||||||||||||||    
T  177549 gaacagagaatgttgaagaagtgacacaatgcatgatgagtttgat 177504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 120 - 196
Target Start/End: Complemental strand, 573342 - 573266
Alignment:
Q  120 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaagg 196  Q
    ||||| ||||||||||||||||| || ||||| || | |||||||||||||| ||||||||| ||||| || |||||    
T  573342 agcttctccatgcaaaggatgaataggtaaggagagagcggatcaccttgtctgaggccatgggaaggtttaaaagg 573266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 273
Target Start/End: Complemental strand, 19265551 - 19265413
Alignment:
Q  135 aggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaagtatagagtaactag 234  Q
    ||||||||||||||||| |||| ||| |||||||| || || ||||||| |||||||||||| |  | |||||| || ||||| |  |  ||||| || |    
T  19265551 aggatgaaaagataaggagacagcgggtcaccttgacgaagtccatgagtaggcttgaaaggagagagcttgtttccattccataacaaggagtagcttg 19265452  T
Q  235 gagaagctacgcaatgcatgatgagtttgatggtgatgt 273  Q
    | || |  || ||||||||||||||||||||||| ||||    
T  19265451 gtgaggtaacacaatgcatgatgagtttgatggtaatgt 19265413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 201
Target Start/End: Original strand, 42403209 - 42403295
Alignment:
Q  115 ctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggca 201  Q
    ||||||||||||||||||| || || || |||||||| || |  || |||||||| |||||||||||||  ||||||||||| ||||    
T  42403209 ctgaaagcttttccatgcacagtataaatagataaggtgagagagggtcaccttgccggaggccatgagtgggcttgaaaggaggca 42403295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 120 - 171
Target Start/End: Original strand, 35062956 - 35063007
Alignment:
Q  120 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtc 171  Q
    ||||||||||| ||||||||||||||||| ||||| |  |||||||||||||    
T  35062956 agcttttccatacaaaggatgaaaagatagggggatagtggatcaccttgtc 35063007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 120 - 210
Target Start/End: Complemental strand, 76057 - 75967
Alignment:
Q  120 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcc 210  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||| ||| ||||||| ||||||||| |  |||| ||||||||    
T  76057 agcttttccatgcaaaggatgaaaagataaggggacaactggtcaccttgtctgagaccatgagtaggcttgaaggaaggcagcttgttcc 75967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 120 - 226
Target Start/End: Original strand, 32874457 - 32874563
Alignment:
Q  120 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaa 219  Q
    |||||||||||||||| |||||| | ||| || || | ||| || ||||| |||||||||||||||||||||||||| |||||||||||||| || ||||    
T  32874457 agcttttccatgcaaatgatgaataaatagggagagagcgggtctccttggcggaggccatgagaaggcttgaaaggaggcaacttgttcccatttcaaa 32874556  T
Q  220 gtataga 226  Q
    | |||||    
T  32874557 ggataga 32874563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 274
Target Start/End: Complemental strand, 7817285 - 7817131
Alignment:
Q  120 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaa 219  Q
    ||||||||||||||||| |||||||| ||||| || || || ||||| |||| ||| ||||||| |||||||||||  || |  |||||||| ||||| |    
T  7817285 agcttttccatgcaaagaatgaaaaggtaaggagataaagggtcaccctgtctgagaccatgagtaggcttgaaagaaggaagtttgttcccattccata 7817186  T
Q  220 gtatagagtaactaggagaagctacgcaatgcatgatgagtttgatggtgatgtc 274  Q
      ||||||||  | |  || | ||| |||||||||||||| ||||| ||||||||    
T  7817185 aaatagagtagttggaggatgatacacaatgcatgatgagcttgattgtgatgtc 7817131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 217
Target Start/End: Original strand, 6641008 - 6641110
Alignment:
Q  115 ctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgtt 214  Q
    ||||||| ||||||||||| |  ||||| || || || || | ||||||||||| ||||||||||||||  ||||||||||| | ||  ||||| |||||    
T  6641008 ctgaaagtttttccatgcacataatgaagaggtagggagagagcggatcaccttttcggaggccatgagtgggcttgaaaggggacattttgtttccgtt 6641107  T
Q  215 cca 217  Q
    |||    
T  6641108 cca 6641110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 123 - 274
Target Start/End: Original strand, 54477407 - 54477558
Alignment:
Q  123 ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaagta 222  Q
    |||||||||||||| ||||| |||||||||||||| ||||||||||| || || ||||| | |||||||||||  || | |||||| || |||||||| |    
T  54477407 ttttccatgcaaagaatgaagagataaggggacaaaggatcaccttggcgcagaccatgtgtaggcttgaaagatggaagcttgtttccattccaaagga 54477506  T
Q  223 tagagtaactaggagaagctacgcaatgcatgatgagtttgatggtgatgtc 274  Q
    || ||||  | |  || |  || |||||||||||||| ||||||||||||||    
T  54477507 taaagtattttgatgatgaaacacaatgcatgatgagcttgatggtgatgtc 54477558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 220
Target Start/End: Original strand, 46784469 - 46784572
Alignment:
Q  117 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttcc 216  Q
    ||||| |||| ||||||||||||||| || || || || |  |||||||||||||  |||||||||| ||| |||||||||||||| || || || ||||    
T  46784469 gaaagttttttcatgcaaaggatgaagaggtagggagatagaggatcaccttgtctaaggccatgagtaggtttgaaaggcggcaatttatttccattcc 46784568  T
Q  217 aaag 220  Q
    ||||    
T  46784569 aaag 46784572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 3881868 - 3881787
Alignment:
Q  120 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggca 201  Q
    ||||||||||| ||||| ||||| || ||| | || | |||||||||||||||||||||||| | ||| |||||| ||||||    
T  3881868 agcttttccatacaaagaatgaagaggtaaagagaaagcggatcaccttgtcggaggccatgtgtaggtttgaaatgcggca 3881787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 117 - 274
Target Start/End: Original strand, 24990660 - 24990817
Alignment:
Q  117 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttcc 216  Q
    |||||||| ||||||||||| |||||||||||||| || | ||| |||||||||| ||| ||||| |  ||||||||||| ||||  ||||| |||||||    
T  24990660 gaaagcttctccatgcaaagaatgaaaagataaggagagagcgggtcaccttgtctgagaccatgggtgggcttgaaagggggcattttgttaccgttcc 24990759  T
Q  217 aaagtatagagtaactaggagaagct-acgcaatgcatgatgagtttgatggtgatgtc 274  Q
    | |  |||||  || | |||| || | || || ||||||||||||||||||||||||||    
T  24990760 ataaaatagaaaaagt-ggaggaggtgacacagtgcatgatgagtttgatggtgatgtc 24990817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 274
Target Start/End: Original strand, 24893833 - 24893990
Alignment:
Q  117 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttcc 216  Q
    ||||||||||||||||| || |||||||||||||| || | ||| |||||||||| ||| ||||| |  ||||||||||| ||||  ||||| || ||||    
T  24893833 gaaagcttttccatgcatagtatgaaaagataaggagagagcgggtcaccttgtctgagaccatgtgtgggcttgaaagggggcattttgttaccattcc 24893932  T
Q  217 aaagtatagagtaactaggagaagct-acgcaatgcatgatgagtttgatggtgatgtc 274  Q
    | | ||| ||| ||   |||| || | || |||||||||||||| ||||||||||||||    
T  24893933 ataatatggag-aatgtggaggaggtgacacaatgcatgatgagcttgatggtgatgtc 24893990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 227
Target Start/End: Original strand, 27852952 - 27853059
Alignment:
Q  120 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaa 219  Q
    ||||||||||| ||||||||||| |  ||||| || || || || |||||||  || |||||||||||||||||||  ||||  ||||| ||||||||||    
T  27852952 agcttttccatacaaaggatgaataagtaaggagataaagggtccccttgtcttagaccatgagaaggcttgaaagaaggcattttgtttccgttccaaa 27853051  T
Q  220 gtatagag 227  Q
    | ||||||    
T  27853052 gaatagag 27853059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 217
Target Start/End: Complemental strand, 13599745 - 13599639
Alignment:
Q  111 gcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcc 210  Q
    ||||||||||| |||||||| || | |||||| |||||||| || |  ||||||||||| |||||  |||||| |||||||||  |||| |||||||| |    
T  13599745 gcagctgaaagtttttccatacacaagatgaagagataaggtgaaagaggatcaccttgacggagatcatgagtaggcttgaattgcggaaacttgttac 13599646  T
Q  211 cgttcca 217  Q
    | |||||    
T  13599645 cattcca 13599639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 274
Target Start/End: Original strand, 16769956 - 16770116
Alignment:
Q  114 gctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgt 213  Q
    ||||| || |||||||| || | |||||| |||||||| || |  |||||||||||||| || ||||||| ||| |||||| ||||||| ||||| || |    
T  16769956 gctgagagtttttccatacacaagatgaagagataaggtgaaagaggatcaccttgtcgaagaccatgagtaggtttgaaatgcggcaatttgttaccat 16770055  T
Q  214 tccaaagtatagagtaactaggagaagctacgcaatgcatgatgagtttgatggtgatgtc 274  Q
    |||| |  |||||| || | | |||||  || || ||||| || ||||||||||| |||||    
T  16770056 tccataaaatagagaaagtggaagaagaaacacagtgcataataagtttgatggtaatgtc 16770116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 217
Target Start/End: Original strand, 27781628 - 27781727
Alignment:
Q  118 aaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttcca 217  Q
    ||||||| |||||||| |||||||| || ||||| || |  || |||||||||| |||||||||||  ||||| || || ||||  ||||||||||||||    
T  27781628 aaagcttctccatgcagaggatgaagaggtaaggtgaaagagggtcaccttgtctgaggccatgagttggcttaaatggaggcattttgttcccgttcca 27781727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 193
Target Start/End: Original strand, 1353794 - 1353864
Alignment:
Q  123 ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaa 193  Q
    |||||||| ||||| ||||||||||| || || |  ||||||||||||  ||||||||||| |||||||||    
T  1353794 ttttccatacaaagaatgaaaagatatggtgagagtggatcaccttgtatgaggccatgagtaggcttgaa 1353864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 265
Target Start/End: Original strand, 1579159 - 1579304
Alignment:
Q  120 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaa 219  Q
    ||||||||||||||||| || || || |||||||| | ||||||||| |||| ||| ||||||| ||| |  || || ||||||||||| |  ||| | |    
T  1579159 agcttttccatgcaaagaataaagaggtaaggggagagcggatcaccctgtctgagcccatgagtaggatgaaagggaggcaacttgtttctattctaga 1579258  T
Q  220 gtatagagtaactaggagaagctacgcaatgcatgatgagtttgat 265  Q
    | |||||| || | | |||||  || |||||||||||||| |||||    
T  1579259 gaatagagaaagttgaagaagaaacacaatgcatgatgagattgat 1579304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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