View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8905A_low_107 (Length: 288)
Name: NF8905A_low_107
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_107 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 7 - 286
Target Start/End: Complemental strand, 48585673 - 48585394
Alignment:
| Q |
7 |
cagccttcagagctcttcagcactccgctgaaattgaggttgctggtagaccctctatttctcaaattatcaagaatcatgctgatttaaacaaaccatt |
106 |
Q |
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| T |
48585673 |
cagccttcagagctcttcagcactccgctgaaattgaggttgctggtagaccctctatttctcaaatgatcaagaatcatgctgatttaaacaaaccatt |
48585574 |
T |
|
| Q |
107 |
ttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaacacaatattccttctgttttatcatggactaattccgctgctgtt |
206 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48585573 |
ttcatgtatcataaacaattatttttttccatgggtttgtgatgttgctaatgaacacaatattccttctgttttatcatggactaattccgctgctgtt |
48585474 |
T |
|
| Q |
207 |
ttcaccacttactataactatgtccacaaattaacacctttccctacaaatgaagaaccttatattgatgtccatctcat |
286 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
48585473 |
ttcaccacttactataactatgtccacaaattaacacctttccctacaaatgaagaaccttatattgatgttcaactcat |
48585394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 9 - 277
Target Start/End: Complemental strand, 48640244 - 48639976
Alignment:
| Q |
9 |
gccttcagagctcttcagcactccgctgaaattgaggttgctggtagaccctctatttctcaaattatcaagaatcatgctgatttaaacaaaccatttt |
108 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| |||| || |||||| ||||| || ||||||||||| |||| |||||||||||||| |
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| T |
48640244 |
gccttcagagctcttcagcactatgctgaaattgaggttgctggcagacactttatttcacaaatgataaagaatcatgccgattcaaacaaaccatttt |
48640145 |
T |
|
| Q |
109 |
catgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaacacaatattccttctgttttatcatggactaattccgctgctgtttt |
208 |
Q |
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| T |
48640144 |
catgtatcataaacaactatttttttccatgggtttgtgacgttgctaatgaacacaatattccttctgttttgtcatggactaattccgctgctgtttt |
48640045 |
T |
|
| Q |
209 |
caccacttactataactatgtccacaaattaacacctttccctacaaatgaagaaccttatattgatgt |
277 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
48640044 |
caccacttactataactatgtccacaaattaacatctttccctacaaatgaagaaccttatattgatgt |
48639976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 64 - 277
Target Start/End: Complemental strand, 48661841 - 48661628
Alignment:
| Q |
64 |
tttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaaca |
163 |
Q |
| |
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|||||||||| ||||||||||||||||||| |||||||||| |||||||| ||||||||||| ||||||||||||||| | ||| |||||| |
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| T |
48661841 |
tttctcaaatgatcaagaatcatgctgattcaaacaaaccaatttcatgtgtcataaacaatccatttcttccatgggtttgtgatatagcttttgaaca |
48661742 |
T |
|
| Q |
164 |
caatattccttctgttttatcatggactaattccgctgctgttttcaccacttactataactatgtccacaaattaacacctttccctacaaatgaagaa |
263 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||| ||| ||||| || || |||| |||||||||||||||| ||||||||| ||||||||||| |
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| T |
48661741 |
caatattccttctgctttattatggactaattccagtgcagtttttgccgtttgctatgactatgtccacaaattggtacctttcccatcaaatgaagaa |
48661642 |
T |
|
| Q |
264 |
ccttatattgatgt |
277 |
Q |
| |
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||||| |||||||| |
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| T |
48661641 |
ccttacattgatgt |
48661628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 62 - 277
Target Start/End: Complemental strand, 48667438 - 48667223
Alignment:
| Q |
62 |
tatttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaa |
161 |
Q |
| |
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|||||||||||| || |||||||||||||||| ||||||||| |||||||||| |||||||| ||||||||| ||||| | ||| |||| |
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| T |
48667438 |
tatttctcaaatgataaagaatcatgctgattcgaacaaaccaatttcatgtattataaacaaccctttttttccatgggttagtgatatagcttttgaa |
48667339 |
T |
|
| Q |
162 |
cacaatattccttctgttttatcatggactaattccgctgctgttttcaccacttactataactatgtccacaaattaacacctttccctacaaatgaag |
261 |
Q |
| |
|
|||||||||||||||| ||| | |||||||||||| |||||||||||||| || |||| | |||||||||||||| |||||||||| ||||||||| |
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| T |
48667338 |
cacaatattccttctgctttgttatggactaattctagtgctgttttcaccatttgctatgattatgtccacaaattgttacctttcccttcaaatgaag |
48667239 |
T |
|
| Q |
262 |
aaccttatattgatgt |
277 |
Q |
| |
|
|||||||||||||||| |
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| T |
48667238 |
aaccttatattgatgt |
48667223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 64 - 277
Target Start/End: Original strand, 48618046 - 48618259
Alignment:
| Q |
64 |
tttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaaca |
163 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||| |
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| T |
48618046 |
tttctcaaatgatcaagaatcatgctgattcaaacaaaccattttcatgtatcataaacaatccttttgttccatgggtttgtgatgtagctgatgaaca |
48618145 |
T |
|
| Q |
164 |
caatattccttctgttttatcatggactaattccgctgctgttttcaccacttactataactatgtccacaaattaacacctttccctacaaatgaagaa |
263 |
Q |
| |
|
||||||||||| ||| | ||||| | | || |||||||||| | |||||||||||||| |||||||| | || ||||||| || | |||| |
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| T |
48618146 |
tggtattccttctgctttgttatggattcaatcaactgctgttttttctgcttactataactatttccacaaactggtacgtttcccttcacaaacagaa |
48618245 |
T |
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| Q |
264 |
ccttatattgatgt |
277 |
Q |
| |
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|||||||||||||| |
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| T |
48618246 |
ccttatattgatgt |
48618259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 64 - 277
Target Start/End: Complemental strand, 48629155 - 48628942
Alignment:
| Q |
64 |
tttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaaca |
163 |
Q |
| |
|
||||| |||| ||||||||||||||||||| || |||||| |||||||||||||| ||||| ||||||||||| ||||| ||| |||||| |
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| T |
48629155 |
tttctaaaatgatcaagaatcatgctgattcaagtaaaccaatttcatgtatcatatacaatccttttcttccatgggtttgcgatgtagcttttgaaca |
48629056 |
T |
|
| Q |
164 |
caatattccttctgttttatcatggactaattccgctgctgttttcaccacttactataactatgtccacaaattaacacctttccctacaaatgaagaa |
263 |
Q |
| |
|
| |||||||||| ||||||||||| |||||| |||||||||| |||||||||||||||||||||||||| | |||||| ||| || | |||| |
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| T |
48629055 |
tgacattccttctgctttatcatggaataattctagtgctgttttcgccacttactataactatgtccacaaacttgtaccttttccttcagaaacagaa |
48628956 |
T |
|
| Q |
264 |
ccttatattgatgt |
277 |
Q |
| |
|
|||||||||||||| |
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| T |
48628955 |
ccttatattgatgt |
48628942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 64 - 277
Target Start/End: Complemental strand, 48653409 - 48653196
Alignment:
| Q |
64 |
tttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaaca |
163 |
Q |
| |
|
|||||||||| ||||||||||||||||| | |||||||||| |||||||| ||||||| ||| || |||||||||||||| ||| ||||||| |
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|
| T |
48653409 |
tttctcaaatgatcaagaatcatgctgagtcaaacaaaccaatttcatgtctcataaataatccctttcttccttgggtttgtgatgtagctgatgaaca |
48653310 |
T |
|
| Q |
164 |
caatattccttctgttttatcatggactaattccgctgctgttttcaccacttactataactatgtccacaaattaacacctttccctacaaatgaagaa |
263 |
Q |
| |
|
||||||||||||||||| |||| | | ||| | |||||| | ||| ||||||| |||||| |||||||| | || ||||||| ||||||||||| |
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| T |
48653309 |
tggtattccttctgttttattatgggttcaatccaccgctgttcttaccgcttactacaactatttccacaaactggtacgtttcccttcaaatgaagaa |
48653210 |
T |
|
| Q |
264 |
ccttatattgatgt |
277 |
Q |
| |
|
|||||||||||||| |
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|
| T |
48653209 |
ccttatattgatgt |
48653196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 66 - 188
Target Start/End: Complemental strand, 11547518 - 11547396
Alignment:
| Q |
66 |
tctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaacaca |
165 |
Q |
| |
|
|||||||| ||||||||||||| ||| | |||||||||| |||| ||||||||||||||| || |||||||||||||| ||| ||||||| |
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| T |
11547518 |
tctcaaatgatcaagaatcatgttgagtcaaacaaaccaatttcttgtatcataaacaatccttttgttccttgggtttgtgatgtagctcatgaacatg |
11547419 |
T |
|
| Q |
166 |
atattccttctgttttatcatgg |
188 |
Q |
| |
|
||||||||||||||||| |||| |
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| T |
11547418 |
gtattccttctgttttattatgg |
11547396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 277
Target Start/End: Complemental strand, 27228385 - 27228243
Alignment:
| Q |
135 |
ccatgggtttgtgatgttgctaatgaacacaatattccttctgttttatcatggactaattccgctgctgttttcaccacttactataactatgtccaca |
234 |
Q |
| |
|
||||||||| ||||||| ||| ||||| | | |||||||||| ||||| ||||| | | |||| |||||||||| | |||||||||||||| | |||| |
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| T |
27228385 |
ccatgggttagtgatgtagctgctgaactcgagattccttctgctttattatggattcaatccggtgctgttttcgcagcttactataactattttcaca |
27228286 |
T |
|
| Q |
235 |
aattaacacctttccctacaaatgaagaaccttatattgatgt |
277 |
Q |
| |
|
|| | || ||||||| | |||| |||||||||||||||||| |
|
|
| T |
27228285 |
aactggtacgtttcccttcgaatgcagaaccttatattgatgt |
27228243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 227
Target Start/End: Original strand, 19665402 - 19665565
Alignment:
| Q |
64 |
tttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaaca |
163 |
Q |
| |
|
|||||||||| || ||||||||| ||| | ||||||||| |||| || |||||||||||| ||||||||||||||||| ||| | |||| |
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| T |
19665402 |
tttctcaaatgattaagaatcataatgagtcaaacaaacctatttcttgcatcataaacaatccttttcttccatgggtttgtgatgtagcttctcaaca |
19665501 |
T |
|
| Q |
164 |
caatattccttctgttttatcatggactaattccgctgctgttttcaccacttactataactat |
227 |
Q |
| |
|
|||||||||||| ||| | ||||| | | ||| ||||||||||||| |||||||||||||| |
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|
| T |
19665502 |
tgatattccttctgctttgttatggattcaatccactgctgttttcactgcttactataactat |
19665565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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