View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_11 (Length: 454)
Name: NF8905A_low_11
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 20 - 437
Target Start/End: Original strand, 33127411 - 33127831
Alignment:
| Q |
20 |
catcaaagttggtacacgaagcaactaaaacgcattagcacaatccattgaactcgtaatacgagtgcaaaactaaataacaaaaaaggtgtgcgacctc |
119 |
Q |
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| T |
33127411 |
catcaaagttggtacacgaagcaactaaaacacattagcacaatccatcgaactcgtaatacgagtgcaaaaccaaataacaaaaaaggtgtgtgacctc |
33127510 |
T |
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| Q |
120 |
acgatgaactcgaaccaacaacaacccaatgctagcagtagcacaacgaaaacacaaaccagtagtagcgaattgcaataaatagatcaacaacaacaac |
219 |
Q |
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| T |
33127511 |
acgatgaactcgaaccaacaacaacccaatgctagcagtagcacaacgaaaacacaaaccagtagtagcgaattgcaataaatagatcaacaacaacaac |
33127610 |
T |
|
| Q |
220 |
ctagaagtgaatcttccagatcgtgaagtacaaaaaaccagtcatagaattgcccttttat---atagggttaagggacaacatgttcgcttggatccaa |
316 |
Q |
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| T |
33127611 |
ctagaagtgaatcttccagatcgtgaagtacaaaaaatcagtcataaaattgcccttttatataatagggttaagggacaacatgttcgcttggatccaa |
33127710 |
T |
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| Q |
317 |
acgatgaagagccaaaggagtaggaaacatgtaagaacgactagagccataggcggcaatggaaggccaccgaagaatatgcaatcatgaggaggggcat |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33127711 |
acgatgaagagccaaaggagtaggaaacatgtaagaacgactagagccataggcggcaatggaaggccaccgaagaatatgcaatcatgaggaggggcat |
33127810 |
T |
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| Q |
417 |
gcgtacaacggtgttgatgtc |
437 |
Q |
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| T |
33127811 |
gcgtacaacggtgttgatgtc |
33127831 |
T |
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