View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_112 (Length: 286)
Name: NF8905A_low_112
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_112 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 4 - 286
Target Start/End: Original strand, 18245191 - 18245473
Alignment:
| Q |
4 |
cagtaacatagacttgaagtgaagtgatcgattgtccaatcatttagatgcatgagttatgattgtagatgtcactttagtttttcatacatattagttg |
103 |
Q |
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| T |
18245191 |
cagtaacatagacttgaagtgaagtgatcgattgtccaatcatttagatgcatgagttatgattgtagatgtcactttagtttttcatacatattagttg |
18245290 |
T |
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| Q |
104 |
tgatagttatgatatgttctattctccatagaaataccatcaattgctaaaagagtattaatcactattaacatgttcccttatgcttaagcagttttcc |
203 |
Q |
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| T |
18245291 |
tgatagttatgatatgttctattctccatagaaataccatcaattgctaaaagagcattaatcactattaacatgttcccttatgcttaagcagttttcc |
18245390 |
T |
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| Q |
204 |
atacttcactgcacagattttagcaagggaaacaattttatggaaatgtacagtttatataaatctttggtgcatttgactga |
286 |
Q |
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| T |
18245391 |
atacttcactgcacagattttagcaagggaaacaattttatggaaatgtacagtttatataaatgtttggtgcatttgactga |
18245473 |
T |
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Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 4 - 284
Target Start/End: Original strand, 25691734 - 25692015
Alignment:
| Q |
4 |
cagtaacatagacttgaagtgaagtgatcgattgtccaatcatttagatgcatgagttatgattgtagatgtcactttagtttttcatacatattagttg |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
25691734 |
cagtaacatagacttgaagtgaagtgatcgattgtccaatcatttagatgcatgagttatgattgtaaatgtcactttagtttttcatacatattggttg |
25691833 |
T |
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| Q |
104 |
tgatagttatgatatgttctattctccatagaaataccatcaattgctaaaagagtattaatcactattaacatgttcccttatgc-ttaagcagttttc |
202 |
Q |
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|||||||||||||||||||||||||| ||||||||| |||||||||||||||| | ||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
25691834 |
tgatagttatgatatgttctattctctatagaaatatcatcaattgctaaaagtgccttaattactattaacatgttcccttatgctttaagcagttttc |
25691933 |
T |
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| Q |
203 |
catacttcactgcacagattttagcaagggaaacaattttatggaaatgtacagtttatataaatctttggtgcatttgact |
284 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25691934 |
catatttcactgcacagattttagcaagggaaacaattttatggaaatgtacagtttatataaatctttggtgcatttgact |
25692015 |
T |
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