View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_114 (Length: 285)
Name: NF8905A_low_114
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_114 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 9 - 285
Target Start/End: Complemental strand, 31557304 - 31557029
Alignment:
| Q |
9 |
ctcaacataacattaattagatcagcaataatnnnnnnnctaatcatgtacctgccatctccatggattgaaggtgcgagcatctttgaaatgttcagga |
108 |
Q |
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| T |
31557304 |
ctcaacataacattaattagatcagcaataataaaaaa-ctaatcatgtacctgccatctccatggattgaaggtgcgagcatctttgaaatgttcagga |
31557206 |
T |
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| Q |
109 |
ttcaaatgcacagcacgaaatgatgcaatcaccttcattcccttaggaattgtgtaacctattattacaaagtggggcattgtaaattgacatgtgcttt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31557205 |
ttcaaatgcacagcacgaaatgatgcaatcaccttcattcccttaggaattgtgtaacctattattacaaagtggggcattgtaaattgacatgtgcttt |
31557106 |
T |
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| Q |
209 |
gtctattatatgatataatattattgactatatagtcaatacagttttattttcttatagtaccttttatgtcgatg |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31557105 |
gtctattatatgatataatattattgactatatagtcaatacagttttattttcttatagtaccttttatgtcgatg |
31557029 |
T |
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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 57 - 136
Target Start/End: Complemental strand, 35479046 - 35478967
Alignment:
| Q |
57 |
tacctgccatctccatggattgaaggtgcgagcatctttgaaatgttcaggattcaaatgcacagcacgaaatgatgcaa |
136 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||| || || || | ||| || |||||||||||||||| |
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| T |
35479046 |
tacctgccatctccatggattgaaggtgcgcgcatctttgaaatgatcggggtttagatgtacggcacgaaatgatgcaa |
35478967 |
T |
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