View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_115 (Length: 284)
Name: NF8905A_low_115
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_115 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 11 - 284
Target Start/End: Original strand, 19864024 - 19864297
Alignment:
| Q |
11 |
tggtggtgatgaatattctcttgtaaatttgagaaggttgcatgaacttcaattgtctagatatgtgtctattgataacttatatgaggacattgtaatg |
110 |
Q |
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| T |
19864024 |
tggtggtgatgaatattctcttgtaaatttgagaaggttgcatgaacttcaattgtctagatatgtgtctattgataacttacatgaggaaattgtaatg |
19864123 |
T |
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| Q |
111 |
gtgttacgtaattataggaatgtggaggatgaggtgggtaaatggtttctcatagaaggtgttatgtttcctccgatattcttatttctgtctgattaat |
210 |
Q |
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| T |
19864124 |
gtgttacgtaattataggaatgtggaggatgaggtgagtaaatggttgctcatagaaggtgctatgtttcctccgatattcttatttctgtctgattaat |
19864223 |
T |
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| Q |
211 |
tttctgcttattccgcattcaggttgttggtttgctgcttcagttaatgcattttcatctggcatagagtttga |
284 |
Q |
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| T |
19864224 |
tttctgcttattccgcattcaggttgttggtttgctgcttcagctattgcattttcatctggcatggagtttga |
19864297 |
T |
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Target: chr7 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 15 - 283
Target Start/End: Complemental strand, 43838479 - 43838208
Alignment:
| Q |
15 |
ggtgatgaatattctctt---gtaaatttgagaaggttgcatgaacttcaattgtctagatatgtgtctattgataacttatatgaggacattgtaatgg |
111 |
Q |
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| T |
43838479 |
ggtgatgaatattctcttcttgtaaatttgaaaaggttgtatgaacttcaattgtctagatatgtgcctattgataacctatatgaagacattgtaatgg |
43838380 |
T |
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| Q |
112 |
tgttacgtaattataggaatgtggaggatgaggtgggtaaatggtttctcatagaaggtgttatgtttcctccgatattcttatttctgtctgattaatt |
211 |
Q |
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| T |
43838379 |
tgctacgtgatgttaggaatatggaggatgaggtaagtaaatggctgctcacagatggtgttatgtttcctgtgatattcttatttgggtttggttaatt |
43838280 |
T |
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| Q |
212 |
ttctgcttattccgcattcaggttgttggtttgctgcttcagttaatgcattttcatctggcatagagtttg |
283 |
Q |
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| T |
43838279 |
ttctgcctgttccctatccaggttgttggtttgctgcttcagaacatgcatattcatctggcttggagtttg |
43838208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 29 - 119
Target Start/End: Original strand, 35129716 - 35129806
Alignment:
| Q |
29 |
tcttgtaaatttgagaaggttgcatgaacttcaattgtctagatatgtgtctattgataacttatatgaggacattgtaatggtgttacgt |
119 |
Q |
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| T |
35129716 |
tcttgtaaatttgagaatgttgtatgaactgcaactgtttagatatgtacctattgataacctatatgaagacattgtaatggtgctacgt |
35129806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 8 - 145
Target Start/End: Complemental strand, 18144247 - 18144107
Alignment:
| Q |
8 |
ggctggtggtgatgaatattctctt---gtaaatttgagaaggttgcatgaacttcaattgtctagatatgtgtctattgataacttatatgaggacatt |
104 |
Q |
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| T |
18144247 |
ggctgggggtgatgaatattctcttcttgtaaatttgagaaggttgtatgaacttcaattgtctaaatatgtgcctattgataagctatatgaagacatt |
18144148 |
T |
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| Q |
105 |
gtaatggtgttacgtaattataggaatgtggaggatgaggt |
145 |
Q |
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| T |
18144147 |
gtaatggtgctacgcgatgttaggaatatgaaggatgaggt |
18144107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 145
Target Start/End: Original strand, 18221421 - 18221554
Alignment:
| Q |
15 |
ggtgatgaatattctctt---gtaaatttgagaaggttgcatgaacttcaattgtctagatatgtgtctattgataacttatatgaggacattgtaatgg |
111 |
Q |
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| T |
18221421 |
ggtgatgaatattctcttcttgtaaatttgagaaggttgtatgaacttcaattgtctaaatacgtgcctattgataaactatatgaagacattgtaatgg |
18221520 |
T |
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| Q |
112 |
tgttacgtaattataggaatgtggaggatgaggt |
145 |
Q |
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| T |
18221521 |
tgctacgtgatgttaggaatatggaagatgaggt |
18221554 |
T |
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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 40573297 - 40573366
Alignment:
| Q |
11 |
tggtggtgatgaatattctcttgt---aaatttgagaaggttgcatgaacttcaattgtctagatatgtg |
77 |
Q |
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| T |
40573297 |
tggtggtgatgaatattgtcttcttgcaaatttgagaaggttgcgtgaacttcaattgtctagatatgtg |
40573366 |
T |
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