View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_116 (Length: 284)
Name: NF8905A_low_116
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_116 |
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| [»] scaffold0491 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 2 - 276
Target Start/End: Complemental strand, 1110615 - 1110341
Alignment:
| Q |
2 |
cagtagtttatattggacatttgtactttctcgtttgatgcaatagtaatatattcaacttatagcattcactgctcttatgatgtatgtattggacttc |
101 |
Q |
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| T |
1110615 |
cagtagtttatattggacatttgtacttgctcgtttgatgcaatagtaatatattcaacttatagcattcactgctcttatgatgtatgtattggacttc |
1110516 |
T |
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| Q |
102 |
ttagtacgtatatcagccttgtcaaatagcaagtgcaacgttgcgaaatttgaacaaattgctattgtttcagggtttgctatctagttctaagtgttgt |
201 |
Q |
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| T |
1110515 |
ttggtacgtatatcagccttgtcaaatagcaagtgcaacgttgcgaaatttgaacaaattgctattgtttcgggatatgctatttagttctaagtgttgt |
1110416 |
T |
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| Q |
202 |
caaatagcaactataacagcgacgtgccactatagcatagaggaatttaaaggtttcaacgaattgatattattc |
276 |
Q |
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| T |
1110415 |
caaatagcaactataacagcgacgtgccactatagcatagaggaatttaaaggtttcaatgaattgatattattc |
1110341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0491 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0491
Description:
Target: scaffold0491; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 10 - 276
Target Start/End: Original strand, 4257 - 4519
Alignment:
| Q |
10 |
tatattggacatttgtactttctcgtttgatgcaatagtaatatattcaacttatagcattcactgctctt-atgatgtatgtattggacttcttagtac |
108 |
Q |
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| T |
4257 |
tatattgcacacttgtacttgctagtttaaaacaatagtagtatactcaactttaagcattcactgctcttgatgttgtctgtacttgacttctcaatat |
4356 |
T |
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| Q |
109 |
g-tatatcagccttgtcaaatagcaagtgcaacgttgcgaaatttgaacaaattgctattgtttcagggtttgctatctagttctaagtgttgtcaaata |
207 |
Q |
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| T |
4357 |
ggtatatcggtgttgtcaaatagcaat------gttccgaaatttgaacaaattgctattgtttcgggatatgctatttagttctaagtgtggccaaatg |
4450 |
T |
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| Q |
208 |
gcaactataacagcgacgtgccactatagcatagaggaatttaaaggtttcaacgaattgatattattc |
276 |
Q |
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| T |
4451 |
tcaactataacggcgacataccactatagcgttgtggaatttaaaggtttaaataaattggtattattc |
4519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 10 - 276
Target Start/End: Original strand, 18737558 - 18737820
Alignment:
| Q |
10 |
tatattggacatttgtactttctcgtttgatgcaatagtaatatattcaacttatagcattcactgctctt-atgatgtatgtattggacttcttagtac |
108 |
Q |
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| T |
18737558 |
tatattgcacacttgtacttgctagtttaaaacaatagtagtatactcaactttaagcattcactgctcttgatgttgtctgtacttgacttctcaatat |
18737657 |
T |
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| Q |
109 |
g-tatatcagccttgtcaaatagcaagtgcaacgttgcgaaatttgaacaaattgctattgtttcagggtttgctatctagttctaagtgttgtcaaata |
207 |
Q |
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| T |
18737658 |
ggtatatcggtgttgtcaaatagcaat------gttccgaaatttgaacaaattgctattgtttcgggatatgctatttagttctaagtgtggccaaatg |
18737751 |
T |
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| Q |
208 |
gcaactataacagcgacgtgccactatagcatagaggaatttaaaggtttcaacgaattgatattattc |
276 |
Q |
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| T |
18737752 |
tcaactataacggcgacataccactatagcgttgtggaatttaaaggtttaaaaaaattggtattattc |
18737820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 10 - 276
Target Start/End: Original strand, 18747416 - 18747678
Alignment:
| Q |
10 |
tatattggacatttgtactttctcgtttgatgcaatagtaatatattcaacttatagcattcactgctctt-atgatgtatgtattggacttcttagtac |
108 |
Q |
| |
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| T |
18747416 |
tatattgcacacttgtacttgctagtttaaaacaatagtagtatactcaactttaagcattcactgctcttgatgttgtctgtacttgacttctcagtat |
18747515 |
T |
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| Q |
109 |
g-tatatcagccttgtcaaatagcaagtgcaacgttgcgaaatttgaacaaattgctattgtttcagggtttgctatctagttctaagtgttgtcaaata |
207 |
Q |
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| T |
18747516 |
ggtatatcggtgttgtcaaatagcaat------gttccgaaatttgaacaaattgctatagtttcgggatatgctatttagttctaagtgtggccaaatg |
18747609 |
T |
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| Q |
208 |
gcaactataacagcgacgtgccactatagcatagaggaatttaaaggtttcaacgaattgatattattc |
276 |
Q |
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| T |
18747610 |
tcaactataacggcgacataccactatagcgttgtggaatttaaaggtttaaataaattggtattattc |
18747678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 10 - 276
Target Start/End: Original strand, 18742452 - 18742714
Alignment:
| Q |
10 |
tatattggacatttgtactttctcgtttgatgcaatagtaatatattcaacttatagcattcactgctctt-atgatgtatgtattggacttcttagtac |
108 |
Q |
| |
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||||||| ||| |||||||| || |||| | |||||||| |||| ||||||| |||||||||||||||| ||| ||| |||| | ||||||| |||| |
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| T |
18742452 |
tatattgcacacttgtacttgctagtttaaaacaatagtagtatactcaactttaagcattcactgctcttgatgttgtctgtacttgacttctcagtat |
18742551 |
T |
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| Q |
109 |
g-tatatcagccttgtcaaatagcaagtgcaacgttgcgaaatttgaacaaattgctattgtttcagggtttgctatctagttctaagtgttgtcaaata |
207 |
Q |
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| T |
18742552 |
ggtatatcggtgttgtcaaatagcaat------gttcccaaatttgaacaaattgctatagtttcgggatatgctatttagttctaagtgtggccaaatg |
18742645 |
T |
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| Q |
208 |
gcaactataacagcgacgtgccactatagcatagaggaatttaaaggtttcaacgaattgatattattc |
276 |
Q |
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|||||||||| ||||| | |||||||||| | | ||||||||||||||| || ||||| |||||||| |
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| T |
18742646 |
tcaactataacggcgacataccactatagcgttgtggaatttaaaggtttaaataaattggtattattc |
18742714 |
T |
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