View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_118 (Length: 282)
Name: NF8905A_low_118
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_118 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 13 - 277
Target Start/End: Complemental strand, 55174149 - 55173885
Alignment:
| Q |
13 |
attcttgataaggcaagacatggaggtttgaacgttattcaaacttacgtgttttggaacgctcatgagccagagcaaggcaaggtatatgattaattaa |
112 |
Q |
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| T |
55174149 |
attcttgataaggcaagacatggaggtttgaacgttattcaaacttacgtgttttggaacgctcatgagccagagcaaggcaaggtatatgattaattaa |
55174050 |
T |
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| Q |
113 |
atgacaaaattaatctcttgactcaatgtatggaacatttgattgtaaacttaatttgtttatcaaacgttatgcagttcaactttgaaggcaacaatga |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
55174049 |
atgacaaaattaatctcttgactcaatgtatggaacatttgattgtaaacttaatttgtttatcaaacgttatgcagttcaattttgaaggcaacaatga |
55173950 |
T |
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| Q |
213 |
tttggtgaagttcattaggcttgttcaatcaaaaggaatgtacgtgaccctcagggttggaccgt |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55173949 |
tttggtgaagttcattaggcttgttcaatcaaaaggaatgtacgtgaccctcagggttggaccgt |
55173885 |
T |
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