View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_119 (Length: 280)
Name: NF8905A_low_119
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_119 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 5 - 280
Target Start/End: Complemental strand, 48833994 - 48833719
Alignment:
| Q |
5 |
gattaggtatcaaagacaccgttgacaaaccaaatccaaactctccagcatcaaagaaagtcttaaagtaaaattcatcagatggatcttggtatggcac |
104 |
Q |
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| T |
48833994 |
gattaggtatcaaagacaccgttgacaaaccaaattcaaactctccagcatcaaagaaagtcttaaagtaaaattcatcagatggatcttggtatggcac |
48833895 |
T |
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| Q |
105 |
aaaaagttcagaaatgtatcctttgtataatactctacgagatttgtgcttctctagatcgtaggttgaagccaatgatattataacaccagctcgtaca |
204 |
Q |
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| T |
48833894 |
aaaaagttcagaaatgtatcctttgtataatactctacgagatttgtgcttctctagatcgtaggttgatgccaatgatattataacaccagctcgtaca |
48833795 |
T |
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| Q |
205 |
tcaaatcctatgtgaaacttccaattggcccagctagatccatagataaatatataatatatgttagtctctctaa |
280 |
Q |
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| T |
48833794 |
tcaaatcctatgtgaaacttccaattggcccagctagatccataaataaatatataatatatgttagtctctctaa |
48833719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 48790199 - 48790434
Alignment:
| Q |
1 |
tcacgattaggtatcaaagacaccgttgacaaaccaaatccaaactctccagcatcaaagaaagtcttaaagtaaaattcatcagatggatcttggtatg |
100 |
Q |
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| T |
48790199 |
tcacggttgggtatcaaagacacagtcgatagaccaaatccaaactcaccagaatcgaaaaatgtcttaaagtaaaattcttctgttggatcttggtatg |
48790298 |
T |
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| Q |
101 |
gcacaaaaagttcagaaatgtatcctttgtataatactctacgagatttgtgcttctctagatcgtaggttgaagccaatgatattataacaccagctcg |
200 |
Q |
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| T |
48790299 |
gcacaaacaactcagaaatgtaccctttgtataatactctacgatatatgtgcttctctagatcataaatagatgcaagggatattacaataccagctcg |
48790398 |
T |
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| Q |
201 |
tacatcaaatcctatgtgaaacttccaattggccca |
236 |
Q |
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| T |
48790399 |
tacatcaaatcctatatgaaacttccaattggccca |
48790434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 15825730 - 15825965
Alignment:
| Q |
1 |
tcacgattaggtatcaaagacaccgttgacaaaccaaatccaaactctccagcatcaaagaaagtcttaaagtaaaattcatcagatggatcttggtatg |
100 |
Q |
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| T |
15825730 |
tcacgattaggtatcaaagaaacagtagatcgaccaaatccatactctccagcatcgaaaaatgtcttaaagtaaaactcttctgttggatcttggtatg |
15825829 |
T |
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| Q |
101 |
gcacaaaaagttcagaaatgtatcctttgtataatactctacgagatttgtgcttctctagatcgtaggttgaagccaatgatattataacaccagctcg |
200 |
Q |
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| T |
15825830 |
gcacaaacaactcagaaatataccctttgtataatactctacgagatttgtgtttttcaaggtcgtaaatagatgcaagtgatattataataccagctcg |
15825929 |
T |
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| Q |
201 |
tacatcaaatcctatgtgaaacttccaattggccca |
236 |
Q |
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| T |
15825930 |
tacatcaaatcctatatgaaacttccagttggccca |
15825965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 48816500 - 48816738
Alignment:
| Q |
1 |
tcacgattaggtatcaaagacaccgttgacaaaccaaatccaaactctccagcatcaaagaaagtcttaaagtaaaattcatcagatggatcttggtatg |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| || || | ||| ||||| || | |
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| T |
48816500 |
tcacgattaggtatcaaagacaccgttgacagaccaaatccaaactctccagaatcaaagaaagtcttaaagtaaaactcttcggttgggtcttgataag |
48816599 |
T |
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| Q |
101 |
gcacaaaaagttcagaaatgtatcctttgtataatactctacgagatttgtgcttctctagatcgtaggttgaagccaatgatattataacaccagctcg |
200 |
Q |
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| T |
48816600 |
gcacaaatagctcggaaatgtagcctttgtagagtacacggcgagacttatgtttctctagatcgtaaatagatgcaagtgatatcactataccagctcg |
48816699 |
T |
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| Q |
201 |
tacatcaaatcctatgtgaaacttccaattggcccagct |
239 |
Q |
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| T |
48816700 |
tacatcaaatcctatatgaaacttccagttggcccagct |
48816738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 48807941 - 48808106
Alignment:
| Q |
1 |
tcacgattaggtatcaaagacaccgttgacaaaccaaatccaaactctccagcatcaaagaaagtcttaaagtaaaattcatcagatggatcttggtatg |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| || | ||| ||||| || | |
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| T |
48807941 |
tcacgattaggtatcaaagacaccgttgacagggcaaatccaaactctccagaatcaaagaaagtcttaaagtaaaattcttcggttgggtcttgataag |
48808040 |
T |
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| Q |
101 |
gcacaaaaagttcagaaatgtatcctttgtataatactctacgagatttgtgcttctctagatcgta |
167 |
Q |
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| T |
48808041 |
gcacaaatagctcggaaatgta-gctttgtagagtacacgacgaaacttgtgtttctctatatcgta |
48808106 |
T |
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