View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_120 (Length: 279)
Name: NF8905A_low_120
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_120 |
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Alignment Details
Target: chr6 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 100 - 276
Target Start/End: Complemental strand, 26287639 - 26287476
Alignment:
| Q |
100 |
taaagccaacactaaatcaaagttgaactcccacatgatagcagaaaccgaacatgagtcaaaaaattcaaactccattgtgaatagccacggaaacaaa |
199 |
Q |
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| T |
26287639 |
taaagccaacactaaatcaaagttgaactcccacacaacagcaaaaaccaaacatgagtcaaaaacttcaaactccatta---------acg----caaa |
26287553 |
T |
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| Q |
200 |
tctcaaacacagatcccccgatactcacaccaaaaccctccaaaaccgaccaaaattcctctaaaaaatcatcaaac |
276 |
Q |
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| T |
26287552 |
tctcaaacacatatcccccgatactcacaccaaaaccctccaaaaccgaccaaaattcctctaaaaaatcatcaaac |
26287476 |
T |
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Target: chr6; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 26287301 - 26287204
Alignment:
| Q |
1 |
tcaccaagaaccacctccttgtgatacaagcaatccccatcaataatgattacaaaaaatgcaatcaagggtgtgaga--gccccatgcacgacactc |
96 |
Q |
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| T |
26287301 |
tcaccaagaaccacctccttgtgatacaagcagtccccatcaataatggttacaaaaaatgcaatcaagggtgtgagagcgccccatgcacgacactc |
26287204 |
T |
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