View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8905A_low_124 (Length: 278)

Name: NF8905A_low_124
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8905A_low_124
NF8905A_low_124
[»] chr1 (13 HSPs)
chr1 (133-274)||(1350374-1350515)
chr1 (4-116)||(47586798-47586910)
chr1 (40-123)||(49968797-49968879)
chr1 (49-123)||(41061742-41061814)
chr1 (39-123)||(47107251-47107334)
chr1 (49-116)||(12173683-12173749)
chr1 (46-116)||(10722517-10722585)
chr1 (85-123)||(41181683-41181721)
chr1 (46-123)||(10711698-10711773)
chr1 (40-123)||(9903853-9903934)
chr1 (66-116)||(25592088-25592136)
chr1 (49-123)||(40292681-40292753)
chr1 (66-123)||(1395048-1395103)
[»] chr3 (12 HSPs)
chr3 (1-123)||(24124391-24124513)
chr3 (46-123)||(26845341-26845416)
chr3 (66-123)||(19221599-19221655)
chr3 (49-123)||(32233676-32233749)
chr3 (49-116)||(49500930-49500996)
chr3 (40-123)||(25341922-25342004)
chr3 (49-116)||(43122275-43122341)
chr3 (49-116)||(46664955-46665021)
chr3 (88-123)||(47536740-47536775)
chr3 (85-123)||(32093544-32093582)
chr3 (66-116)||(50543697-50543746)
chr3 (46-123)||(11639437-11639512)
[»] chr7 (10 HSPs)
chr7 (1-123)||(4076744-4076865)
chr7 (4-123)||(18654385-18654503)
chr7 (40-123)||(20037588-20037670)
chr7 (40-123)||(20047719-20047801)
chr7 (58-123)||(23397268-23397331)
chr7 (48-116)||(7459266-7459333)
chr7 (39-108)||(28060062-28060130)
chr7 (46-123)||(46177725-46177800)
chr7 (69-116)||(10282439-10282485)
chr7 (66-123)||(9036298-9036353)
[»] chr4 (8 HSPs)
chr4 (1-123)||(18935136-18935258)
chr4 (66-123)||(1844872-1844928)
chr4 (66-123)||(12881299-12881355)
chr4 (48-123)||(10563904-10563978)
chr4 (40-123)||(19164457-19164538)
chr4 (46-123)||(53779514-53779591)
chr4 (49-123)||(18107153-18107225)
chr4 (66-116)||(31863744-31863792)
[»] chr5 (8 HSPs)
chr5 (4-123)||(40089807-40089926)
chr5 (46-123)||(20209314-20209389)
chr5 (40-123)||(6048707-6048789)
chr5 (46-123)||(4922705-4922780)
chr5 (67-123)||(8891966-8892021)
chr5 (85-123)||(7001394-7001432)
chr5 (85-123)||(34875069-34875107)
chr5 (66-123)||(4416314-4416369)
[»] chr2 (7 HSPs)
chr2 (4-123)||(18704346-18704464)
chr2 (40-123)||(9393007-9393089)
chr2 (46-123)||(24314018-24314093)
chr2 (49-123)||(3000345-3000417)
chr2 (46-84)||(30273507-30273545)
chr2 (66-123)||(7075583-7075638)
chr2 (46-123)||(22295924-22296000)
[»] chr8 (6 HSPs)
chr8 (39-123)||(10267576-10267659)
chr8 (46-116)||(26030969-26031037)
chr8 (48-123)||(45256421-45256495)
chr8 (40-116)||(17658310-17658385)
chr8 (85-123)||(29470828-29470866)
chr8 (88-123)||(31082242-31082277)
[»] chr6 (5 HSPs)
chr6 (49-123)||(26526001-26526073)
chr6 (46-123)||(17079785-17079860)
chr6 (46-123)||(17874395-17874471)
chr6 (46-123)||(6831525-6831600)
chr6 (66-119)||(21251971-21252022)
[»] scaffold0179 (1 HSPs)
scaffold0179 (49-123)||(6997-7070)
[»] scaffold0308 (1 HSPs)
scaffold0308 (67-123)||(11550-11605)
[»] scaffold0007 (1 HSPs)
scaffold0007 (66-116)||(181607-181655)
[»] scaffold0227 (1 HSPs)
scaffold0227 (68-116)||(8404-8450)


Alignment Details
Target: chr1 (Bit Score: 134; Significance: 8e-70; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 133 - 274
Target Start/End: Complemental strand, 1350515 - 1350374
Alignment:
Q  133 ttatatagccaattaggctaactaatttaactaatatgaaactagcttttacatctttaatattttatcacacgaattgcgcttaagaaataatgttgat 232  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  1350515 ttatatagccaattaggctaactaatttaactaatatgaaactagcttttacatctttaatattttatcatacgaattgcgcttaagaaacaatgttgat 1350416  T
Q  233 aaaatgtcactggattaaagctttgtatcagtcctctatgtt 274  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  1350415 aaaatgtcactggattaaagctttgtatcagtcctctatgtt 1350374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 116
Target Start/End: Complemental strand, 47586910 - 47586798
Alignment:
Q  4 cttaatggtttgtttttggatgcttgtctttctgtttgtttttaaagtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatat 103  Q
    ||||||||||||||| ||| |||||| |   ||  |||||||||||||||||| ||| ||| |||||||| |||||||||||||||||||||||||||||    
T  47586910 cttaatggtttgtttatgggtgcttgaccgactcattgtttttaaagtaattcatttggcacaccttgtgttagaggagtttgcttttggtggttaatat 47586811  T
Q  104 atattccattttt 116  Q
    |||||||||||||    
T  47586810 atattccattttt 47586798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 123
Target Start/End: Complemental strand, 49968879 - 49968797
Alignment:
Q  40 tgtttttaaagtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 123  Q
    ||||| |||||||  || ||||||| |||||||||||||| |||| ||||||||||||||||||| ||||||||||| ||||||    
T  49968879 tgtttgtaaagtagctcttttagcacaccttgtgctagagaagtt-gcttttggtggttaatataaattccatttttgattgtt 49968797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 123
Target Start/End: Original strand, 41061742 - 41061814
Alignment:
Q  49 agtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 123  Q
    |||||||| ||||||| ||||||||||||| ||| ||||||||||| ||||||||||||||||||||| ||||||    
T  41061742 agtaattcttttagcacaccttgtgctagaagag-ttgcttttggt-gttaatatatattccatttttgattgtt 41061814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 39 - 123
Target Start/End: Original strand, 47107251 - 47107334
Alignment:
Q  39 ttgtttttaaagtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 123  Q
    |||||| || |||| ||| ||| ||| ||||||| ||||||||||| ||||||||| ||||||||||||| ||||||| ||||||    
T  47107251 ttgtttgtagagtagttcttttggcacaccttgtactagaggagtt-gcttttggtagttaatatatatttcatttttgattgtt 47107334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 116
Target Start/End: Complemental strand, 12173749 - 12173683
Alignment:
Q  49 agtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttt 116  Q
    |||||||| ||| ||| | ||||||||||||||||| | |||| ||||||||||||||||||||||||    
T  12173749 agtaattcttttggcacatcttgtgctagaggagtt-gttttttgtggttaatatatattccattttt 12173683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 116
Target Start/End: Complemental strand, 10722585 - 10722517
Alignment:
Q  46 taaagtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttt 116  Q
    ||||||| ||| ||| ||| ||||||||||||| ||||| ||||||||||||||||||| |||||||||||    
T  10722585 taaagtagttcttttggcacaccttgtgctagaagagtt-gcttttggtggttaatata-attccattttt 10722517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 123
Target Start/End: Complemental strand, 41181721 - 41181683
Alignment:
Q  85 tgcttttggtggttaatatatattccattttttattgtt 123  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  41181721 tgcttttggtggttaatatatatcccattttttattgtt 41181683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 123
Target Start/End: Original strand, 10711698 - 10711773
Alignment:
Q  46 taaagtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 123  Q
    ||||||| ||| ||| ||| ||||||||||||| ||||| ||||||||||||||||||| ||| ||||||| ||||||    
T  10711698 taaagtagttcttttggcacaccttgtgctagaagagtt-gcttttggtggttaatata-atttcatttttgattgtt 10711773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 123
Target Start/End: Original strand, 9903853 - 9903934
Alignment:
Q  40 tgtttttaaagtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 123  Q
    ||||| || |||| ||| ||||||| ||||||| ||||| ||||| ||||||||||||||| ||| ||||||||||| ||||||    
T  9903853 tgtttgtagagtagttcttttagcacaccttgtactagaagagtt-gcttttggtggttaacata-attccatttttgattgtt 9903934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 116
Target Start/End: Original strand, 25592088 - 25592136
Alignment:
Q  66 accttgtgctagaggagtttgcttttggtggttaatatatattccattttt 116  Q
    ||||||||||||| ||||| ||||||||||||||||||| |||||||||||    
T  25592088 accttgtgctagaagagtt-gcttttggtggttaatata-attccattttt 25592136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 123
Target Start/End: Original strand, 40292681 - 40292753
Alignment:
Q  49 agtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 123  Q
    |||| ||| ||| ||| ||||||||||||| ||||| |||||||||| |||||||| ||||||||||| ||||||    
T  40292681 agtagttcttttggcacaccttgtgctagaagagtt-gcttttggtgattaatata-attccatttttgattgtt 40292753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 1395048 - 1395103
Alignment:
Q  66 accttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 123  Q
    ||||||||||||| ||||| | ||||||||||||||||| ||||||||||| ||||||    
T  1395048 accttgtgctagaagagtt-gtttttggtggttaatata-attccatttttgattgtt 1395103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 24124391 - 24124513
Alignment:
Q  1 tcacttaatggtttgtttttggatgcttgtctttctgtttgtttttaaagtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaa 100  Q
    |||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||  || || ||||||||||||||||||||||||||||||||    
T  24124391 tcacttaatggtttgtttttggatgcttgtttgactgtttgtttttaaagtaattcctttgacacactttgtgctagaggagtttgcttttggtggttaa 24124490  T
Q  101 tatatattccattttttattgtt 123  Q
    |||||||||||||||||||||||    
T  24124491 tatatattccattttttattgtt 24124513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 46 - 123
Target Start/End: Complemental strand, 26845416 - 26845341
Alignment:
Q  46 taaagtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 123  Q
    ||||||||||| ||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||    
T  26845416 taaagtaattcttttagcacaccttgtgctagaggag-ttgcttttggt-gttaatatatattccatttttgattgtt 26845341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 19221655 - 19221599
Alignment:
Q  66 accttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 123  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  19221655 accttgtgctagaggagtt-gcttttggttgttaatatatattccattttttattgtt 19221599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 123
Target Start/End: Original strand, 32233676 - 32233749
Alignment:
Q  49 agtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 123  Q
    |||| ||| ||| ||| ||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||    
T  32233676 agtagttcttttggcacaccttgtgctagaggagtt-gcttttggtggttaatataaatttcattttttattgtt 32233749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 116
Target Start/End: Original strand, 49500930 - 49500996
Alignment:
Q  49 agtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttt 116  Q
    |||||||| ||| ||| | ||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  49500930 agtaattcttttggcacatcttgtgctagaggagtt-gctttttgtggttaatatatattccattttt 49500996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 123
Target Start/End: Original strand, 25341922 - 25342004
Alignment:
Q  40 tgtttttaaagtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 123  Q
    ||||| ||||||| ||| ||| ||| ||||| ||||||||  ||| ||||||||||||||||||||||| ||||||| ||||||    
T  25341922 tgtttgtaaagtagttcttttggcacaccttatgctagagtggtt-gcttttggtggttaatatatatttcatttttgattgtt 25342004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 116
Target Start/End: Original strand, 43122275 - 43122341
Alignment:
Q  49 agtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttt 116  Q
    |||||||| ||| ||| | ||| ||||||||||||| |||||| ||||||||||||||||||||||||    
T  43122275 agtaattcttttggcacatcttatgctagaggagtt-gctttttgtggttaatatatattccattttt 43122341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 116
Target Start/End: Complemental strand, 46665021 - 46664955
Alignment:
Q  49 agtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttt 116  Q
    |||||||| ||| ||| | |||||||||||||||||  ||||| ||||||||||||||||| ||||||    
T  46665021 agtaattcttttggcacatcttgtgctagaggagtta-ctttttgtggttaatatatattctattttt 46664955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 123
Target Start/End: Complemental strand, 47536775 - 47536740
Alignment:
Q  88 ttttggtggttaatatatattccattttttattgtt 123  Q
    ||||||||||||||||| ||||||||||||||||||    
T  47536775 ttttggtggttaatataaattccattttttattgtt 47536740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 123
Target Start/End: Original strand, 32093544 - 32093582
Alignment:
Q  85 tgcttttggtggttaatatatattccattttttattgtt 123  Q
    ||||||||||||||||||||||| |||||||| ||||||    
T  32093544 tgcttttggtggttaatatatatcccatttttgattgtt 32093582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 116
Target Start/End: Complemental strand, 50543746 - 50543697
Alignment:
Q  66 accttgtgctagaggagtttgcttttggtggttaatatatattccattttt 116  Q
    ||||| ||||||||||||| ||||||| || ||||||||||||||||||||    
T  50543746 accttatgctagaggagtt-gcttttgatgattaatatatattccattttt 50543697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 123
Target Start/End: Complemental strand, 11639512 - 11639437
Alignment:
Q  46 taaagtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 123  Q
    ||||||| ||| ||| ||| ||||||||| ||| ||||| | ||||||||||||||||| ||||||||||| ||||||    
T  11639512 taaagtagttcttttggcacaccttgtgcaagaagagtt-gattttggtggttaatata-attccatttttgattgtt 11639437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 4076865 - 4076744
Alignment:
Q  1 tcacttaatggtttgtttttggatgcttgtctttctgtttgtttttaaagtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaa 100  Q
    ||||||||||||||||||| ||||||||||||  || ||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||| |||     
T  4076865 tcacttaatggtttgtttt-ggatgcttgtctgactctttgtttttaaagtaattcttttggcacaccttgtgctagaggagtttgcttttggtgattat 4076767  T
Q  101 tatatattccattttttattgtt 123  Q
    |||||||||||||||||||||||    
T  4076766 tatatattccattttttattgtt 4076744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 4 - 123
Target Start/End: Original strand, 18654385 - 18654503
Alignment:
Q  4 cttaatggtttgtttttggatgcttgtctttctgtttgtttttaaagtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatat 103  Q
    |||||||||||| |||||| || |||| |  || | ||||| ||||||| ||| ||| ||| ||||||||||||||||||| |||||||||||||||| |    
T  18654385 cttaatggtttggttttggttgtttgtatgactctgtgtttgtaaagtagttcttttggcacaccttgtgctagaggagtt-gcttttggtggttaattt 18654483  T
Q  104 atattccattttttattgtt 123  Q
    ||||||||||||||||||||    
T  18654484 atattccattttttattgtt 18654503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 40 - 123
Target Start/End: Original strand, 20037588 - 20037670
Alignment:
Q  40 tgtttttaaagtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 123  Q
    ||||| ||||||| ||| ||| ||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  20037588 tgtttgtaaagtagttcttttggcacaccttatgctagaggagtt-gcttttggtggttaatatatattccatttttgattgtt 20037670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 40 - 123
Target Start/End: Original strand, 20047719 - 20047801
Alignment:
Q  40 tgtttttaaagtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 123  Q
    ||||| |||| || ||| ||| ||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  20047719 tgtttgtaaaatagttcttttggcacaccttgtactagaggagtt-gcttttggtggttaatatatattccattttttattgtt 20047801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 58 - 123
Target Start/End: Original strand, 23397268 - 23397331
Alignment:
Q  58 tttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 123  Q
    ||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||    
T  23397268 tttagcacaccttgtgctagaggagttt-cttttggt-gttaatatatattccatttttgattgtt 23397331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 116
Target Start/End: Original strand, 7459266 - 7459333
Alignment:
Q  48 aagtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttt 116  Q
    ||||||||| ||| ||| |||||||||||| |||||| |||||||||| ||||||||||||||||||||    
T  7459266 aagtaattcttttggcacaccttgtgctaggggagtt-gcttttggtgtttaatatatattccattttt 7459333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 108
Target Start/End: Complemental strand, 28060130 - 28060062
Alignment:
Q  39 ttgtttttaaagtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatatt 108  Q
    ||||||||||||||| || |||  || ||||| ||||||||||| |||||||||||| ||||||||||||    
T  28060130 ttgtttttaaagtaactcatttgacacaccttatgctagaggag-ttgcttttggtgtttaatatatatt 28060062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 123
Target Start/End: Complemental strand, 46177800 - 46177725
Alignment:
Q  46 taaagtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 123  Q
    ||||||||||| ||||||| ||||| | ||||||||| ||| ||||||| | ||||||||||||||||||| ||||||    
T  46177800 taaagtaattcttttagcacaccttatactagaggag-ttgtttttggt-gctaatatatattccatttttgattgtt 46177725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 116
Target Start/End: Original strand, 10282439 - 10282485
Alignment:
Q  69 ttgtgctagaggagtttgcttttggtggttaatatatattccattttt 116  Q
    |||||||||||||||| | |||| ||||||||||||||||||||||||    
T  10282439 ttgtgctagaggagtt-gttttttgtggttaatatatattccattttt 10282485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 9036353 - 9036298
Alignment:
Q  66 accttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 123  Q
    ||||| ||||||||||||||  |||||||||||||||||||||  |||||| ||||||    
T  9036353 accttatgctagaggagttt--ttttggtggttaatatatattttatttttgattgtt 9036298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 18935258 - 18935136
Alignment:
Q  1 tcacttaatggtttgtttttggatgcttgtctttctgtttgtttttaaagtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaa 100  Q
    |||||||||||||||||||||||| |||||||  |||||||||||||||||||||| ||| ||| |||||||||||| ||||||||||||||| ||||||    
T  18935258 tcacttaatggtttgtttttggatacttgtctgactgtttgtttttaaagtaattcatttggcacaccttgtgctagtggagtttgcttttggcggttaa 18935159  T
Q  101 tatatattccattttttattgtt 123  Q
    |||||||| ||||||| ||||||    
T  18935158 tatatatttcatttttaattgtt 18935136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 1844872 - 1844928
Alignment:
Q  66 accttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 123  Q
    ||||||||||||||||||| | ||||| ||||||||||| ||||||||||||||||||    
T  1844872 accttgtgctagaggagtt-gtttttgatggttaatataaattccattttttattgtt 1844928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 12881299 - 12881355
Alignment:
Q  66 accttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 123  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||| || ||||||    
T  12881299 accttgtgctagaggagtt-gcttttggtggttaatataaattccattgttgattgtt 12881355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 123
Target Start/End: Original strand, 10563904 - 10563978
Alignment:
Q  48 aagtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 123  Q
    ||||||||| | | ||| ||||| |||||| |||||| |||||||||| |||||||||||||||||||| ||||||    
T  10563904 aagtaattcttctggcacaccttatgctaggggagtt-gcttttggtgtttaatatatattccatttttgattgtt 10563978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 123
Target Start/End: Complemental strand, 19164538 - 19164457
Alignment:
Q  40 tgtttttaaagtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 123  Q
    ||||| || |||| ||| ||| ||| ||||||||||||| ||||| ||||||||||||||||||| ||||||||||| ||||||    
T  19164538 tgtttgtagagtagttcttttggcacaccttgtgctagaagagtt-gcttttggtggttaatata-attccatttttgattgtt 19164457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 123
Target Start/End: Complemental strand, 53779591 - 53779514
Alignment:
Q  46 taaagtaattcctttagcataccttgtgctagaggagtttgcttttggtggtt-aatatatattccattttttattgtt 123  Q
    ||||||||||| ||| ||| ||||||||||||  ||||| |||||||||| || |||||||||| ||||||||||||||    
T  53779591 taaagtaattcttttggcacaccttgtgctaggagagtt-gcttttggtgttttaatatatatttcattttttattgtt 53779514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 123
Target Start/End: Original strand, 18107153 - 18107225
Alignment:
Q  49 agtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 123  Q
    |||| ||| ||| ||| ||||||||| ||| ||||| |||||||||| |||||||| ||||||||||||||||||    
T  18107153 agtagttcttttggcacaccttgtgccagaagagtt-gcttttggtgattaatata-attccattttttattgtt 18107225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 116
Target Start/End: Complemental strand, 31863792 - 31863744
Alignment:
Q  66 accttgtgctagaggagtttgcttttggtggttaatatatattccattttt 116  Q
    ||||||||||||| ||||| ||||||||||||||||||| |||||||||||    
T  31863792 accttgtgctagaagagtt-gcttttggtggttaatata-attccattttt 31863744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 4 - 123
Target Start/End: Complemental strand, 40089926 - 40089807
Alignment:
Q  4 cttaatggtttgtttttggatgcttgtctttctgtttgtttttaaagtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatat 103  Q
    |||||||| |||||| ||| |||||||||  || | ||||||||||| ||||||||| ||| ||||||||||||||| ||| ||||||||||||||||||    
T  40089926 cttaatggattgtttatgggtgcttgtctaactttatgtttttaaagcaattcctttggcacaccttgtgctagaggggttcgcttttggtggttaatat 40089827  T
Q  104 atattccattttttattgtt 123  Q
    ||||| ||||||| ||||||    
T  40089826 atattacatttttgattgtt 40089807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 46 - 123
Target Start/End: Original strand, 20209314 - 20209389
Alignment:
Q  46 taaagtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 123  Q
    ||||||||||| ||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||    
T  20209314 taaagtaattcttttagcacaccttgtgctagaggag-ttgcttttggt-gttaatatatattccatttttgattgtt 20209389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 40 - 123
Target Start/End: Complemental strand, 6048789 - 6048707
Alignment:
Q  40 tgtttttaaagtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 123  Q
    ||||| || |||| ||| ||| ||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  6048789 tgtttgtagagtagttcttttggcacaccttatgctagaggagtt-gcttttggtggttaatatatattccattttttattgtt 6048707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 46 - 123
Target Start/End: Complemental strand, 4922780 - 4922705
Alignment:
Q  46 taaagtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 123  Q
    ||||||||||| ||||||| ||||| ||||||||||| ||||||||||| ||||||||||||||||||||| ||||||    
T  4922780 taaagtaattcttttagcacaccttatgctagaggag-ttgcttttggt-gttaatatatattccatttttgattgtt 4922705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 8892021 - 8891966
Alignment:
Q  67 ccttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 123  Q
    |||||||||| ||||| | |||||||||||||||||||||| |||||||||||||||    
T  8892021 ccttgtgctataggagct-gcttttggtggttaatatatatcccattttttattgtt 8891966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 123
Target Start/End: Original strand, 7001394 - 7001432
Alignment:
Q  85 tgcttttggtggttaatatatattccattttttattgtt 123  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  7001394 tgcttttggtggttaatatatatcccattttttattgtt 7001432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 123
Target Start/End: Original strand, 34875069 - 34875107
Alignment:
Q  85 tgcttttggtggttaatatatattccattttttattgtt 123  Q
    |||||||||||||||||||| ||||||||||| ||||||    
T  34875069 tgcttttggtggttaatataaattccatttttgattgtt 34875107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 4416314 - 4416369
Alignment:
Q  66 accttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 123  Q
    ||||||||||||| ||||| |||||||||| || ||||| ||||||||||||||||||    
T  4416314 accttgtgctagaagagtt-gcttttggtgatttatata-attccattttttattgtt 4416369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 123
Target Start/End: Original strand, 18704346 - 18704464
Alignment:
Q  4 cttaatggtttgtttttggatgcttgtctttctgtttgtttttaaagtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatat 103  Q
    ||||||||||||||||||| |||||||||  || ||||| |||  |||||||| ||| ||| | ||||||||||| ||||| ||||||| ||||||||||    
T  18704346 cttaatggtttgtttttggttgcttgtctgactctttgtatttgcagtaattcttttggcacatcttgtgctagacgagtt-gcttttgatggttaatat 18704444  T
Q  104 atattccattttttattgtt 123  Q
    ||||||||||||||||||||    
T  18704445 atattccattttttattgtt 18704464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 40 - 123
Target Start/End: Complemental strand, 9393089 - 9393007
Alignment:
Q  40 tgtttttaaagtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 123  Q
    ||||| ||||||| ||| ||| ||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  9393089 tgtttgtaaagtatttcttttggcacaccttgtgctagaggagtt-gcttttggtggttaatatatatttcattttttattgtt 9393007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 46 - 123
Target Start/End: Original strand, 24314018 - 24314093
Alignment:
Q  46 taaagtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 123  Q
    ||||||||||| ||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||    
T  24314018 taaagtaattcgtttagcacaccttgtgctagaggag-ttgcttttggt-gttaatatatattccattttttaatgtt 24314093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 123
Target Start/End: Original strand, 3000345 - 3000417
Alignment:
Q  49 agtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 123  Q
    |||| ||| ||| ||| ||||||||| ||| ||||| |||||||||| |||||||| ||||||||||||||||||    
T  3000345 agtagttcttttggcacaccttgtgccagaagagtt-gcttttggtgattaatata-attccattttttattgtt 3000417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 84
Target Start/End: Complemental strand, 30273545 - 30273507
Alignment:
Q  46 taaagtaattcctttagcataccttgtgctagaggagtt 84  Q
    ||||||||||| ||||||| |||||||||||||||||||    
T  30273545 taaagtaattcttttagcacaccttgtgctagaggagtt 30273507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 7075638 - 7075583
Alignment:
Q  66 accttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 123  Q
    ||||||||||||| ||||| ||||||| || |||||||| ||||||||||||||||||    
T  7075638 accttgtgctagaagagtt-gcttttgatgattaatata-attccattttttattgtt 7075583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 123
Target Start/End: Original strand, 22295924 - 22296000
Alignment:
Q  46 taaagtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 123  Q
    ||||||| ||| ||| ||| |||||||| ||||||| || ||||||  ||||||||||||||| ||||||| ||||||    
T  22295924 taaagtagttcttttggcacaccttgtgttagaggaatt-gcttttaatggttaatatatatttcatttttgattgtt 22296000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 10267659 - 10267576
Alignment:
Q  39 ttgtttttaaagtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 123  Q
    |||||||||||||||||||||| ||| ||||||||||||||||| ||  |||||||| ||| |||||||||||||||||||||||    
T  10267659 ttgtttttaaagtaattcctttggcacaccttgtgctagaggag-ttatttttggtgattattatatattccattttttattgtt 10267576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 116
Target Start/End: Complemental strand, 26031037 - 26030969
Alignment:
Q  46 taaagtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttt 116  Q
    ||||| ||||| ||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  26031037 taaagcaattcttttagcacaccttgtgctagaggag-ttgcttttggt-gttaatatatattccattttt 26030969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 123
Target Start/End: Original strand, 45256421 - 45256495
Alignment:
Q  48 aagtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 123  Q
    ||||| ||| ||| ||| ||||||||||||||||||| | ||||||||||||||||||||| |||||| |||||||    
T  45256421 aagtagttcttttggcacaccttgtgctagaggagtt-gtttttggtggttaatatatatttcattttctattgtt 45256495  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 17658385 - 17658310
Alignment:
Q  40 tgtttttaaagtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttt 116  Q
    ||||| |||||||  || ||| ||| ||||||||||| ||||| | |||||||||||||||||||||||||||||||    
T  17658385 tgtttgtaaagtagctcttttggcacaccttgtgctacaggagct-gcttttggtggttaatatatattccattttt 17658310  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 123
Target Start/End: Original strand, 29470828 - 29470866
Alignment:
Q  85 tgcttttggtggttaatatatattccattttttattgtt 123  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  29470828 tgcttttggtggttaatatatatttcattttttattgtt 29470866  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 123
Target Start/End: Original strand, 31082242 - 31082277
Alignment:
Q  88 ttttggtggttaatatatattccattttttattgtt 123  Q
    ||||||||||||||||| ||||||||||||||||||    
T  31082242 ttttggtggttaatataaattccattttttattgtt 31082277  T

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Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 49 - 123
Target Start/End: Complemental strand, 26526073 - 26526001
Alignment:
Q  49 agtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 123  Q
    |||||||| ||||||| |||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||    
T  26526073 agtaattcttttagcacaccttgtgctagagaagtt-gcttttggtg-ttaatatatattccattttttattgtt 26526001  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 123
Target Start/End: Original strand, 17079785 - 17079860
Alignment:
Q  46 taaagtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 123  Q
    ||||||| ||| ||| ||| ||||||||||||| |||||| |||||||||||||||||| ||||||||||| ||||||    
T  17079785 taaagtagttcttttggcacaccttgtgctagaagagttt-cttttggtggttaatata-attccatttttgattgtt 17079860  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 123
Target Start/End: Original strand, 17874395 - 17874471
Alignment:
Q  46 taaagtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 123  Q
    ||||||||||| | | ||| | |||||| ||| |||||| |||||||||| |||||||||||||||||||||||||||    
T  17874395 taaagtaattcttctggcacaacttgtgttaggggagtt-gcttttggtgtttaatatatattccattttttattgtt 17874471  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 123
Target Start/End: Original strand, 6831525 - 6831600
Alignment:
Q  46 taaagtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 123  Q
    ||||||| ||| ||| ||| ||||||||||||| ||| |||||||||||| |||||||| ||||||||||| ||||||    
T  6831525 taaagtagttcttttggcacaccttgtgctagaagag-ttgcttttggtgattaatata-attccatttttgattgtt 6831600  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 119
Target Start/End: Original strand, 21251971 - 21252022
Alignment:
Q  66 accttgtgctagaggagtttgcttttggtggttaatatatattccattttttat 119  Q
    ||||||||||||||||||| ||| |||||| |||||||||||||||||||||||    
T  21251971 accttgtgctagaggagtt-gctcttggtg-ttaatatatattccattttttat 21252022  T

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Target: scaffold0179 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 123
Target Start/End: Complemental strand, 7070 - 6997
Alignment:
Q  49 agtaattcctttagcataccttgtgct-agaggagtttgcttttggtggttaatatatattccattttttattgtt 123  Q
    |||||||| ||||||| || ||||||| ||||||||| |||| ||||| |||||||||||||||||||||||||||    
T  7070 agtaattcttttagcacactttgtgcttagaggagtt-gcttctggtg-ttaatatatattccattttttattgtt 6997  T

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Target: scaffold0308 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 11605 - 11550
Alignment:
Q  67 ccttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 123  Q
    |||||||||| ||||| | |||||||||||||||||||||| |||||||| ||||||    
T  11605 ccttgtgctataggagct-gcttttggtggttaatatatatcccatttttgattgtt 11550  T

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Target: scaffold0007 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 116
Target Start/End: Complemental strand, 181655 - 181607
Alignment:
Q  66 accttgtgctagaggagtttgcttttggtggttaatatatattccattttt 116  Q
    ||||||||||||| ||||| ||||||||||||||||||| |||||||||||    
T  181655 accttgtgctagaagagtt-gcttttggtggttaatata-attccattttt 181607  T

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Target: scaffold0227 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 8404 - 8450
Alignment:
Q  68 cttgtgctagaggagtttgcttttggtggttaatatatattccattttt 116  Q
    ||||||||||| ||||| ||||||||||||||||||| |||||||||||    
T  8404 cttgtgctagaagagtt-gcttttggtggttaatata-attccattttt 8450  T

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