View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8905A_low_127 (Length: 277)
Name: NF8905A_low_127
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_127 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] scaffold0475 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 17 - 244
Target Start/End: Complemental strand, 49330802 - 49330575
Alignment:
| Q |
17 |
aacacatgtgatgtattaattcccttcttgcgaacggcatagtaacataaaccaaacattataattttcctttgtaatttttcgacattgttttgctaaa |
116 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||| ||||||||||| || |||||||||||||||||||| ||||| ||| |||||||||||| |
|
|
| T |
49330802 |
aacacatgtgatgtattacttcccttcttgcgaacgacatactaacataaacctaagattataattttcctttgtaacttttccacactgttttgctaaa |
49330703 |
T |
|
| Q |
117 |
ttcttcaaataaaaaacagcgaaattgttcagttgagttgcttatattacagcttccccatccaatttgattatcaagtctgtgctacctgctgattcgg |
216 |
Q |
| |
|
|| | || ||||||||||||||||||||||| |||||||||||||||| ||| ||| ||||||||||||||| ||||||||||||||||| | ||||||| |
|
|
| T |
49330702 |
ttttacatataaaaaacagcgaaattgttcaattgagttgcttatatttcagtttcaccatccaatttgattctcaagtctgtgctacctaccgattcgg |
49330603 |
T |
|
| Q |
217 |
gaaaaatgtagagcatcacgatttgctt |
244 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
49330602 |
aaaaaatgtagagcatcacgatttgctt |
49330575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 124; Significance: 8e-64; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 146 - 277
Target Start/End: Original strand, 4660393 - 4660524
Alignment:
| Q |
146 |
cagttgagttgcttatattacagcttccccatccaatttgattatcaagtctgtgctacctgctgattcgggaaaaatgtagagcatcacgatttgctta |
245 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4660393 |
cagttgagttgcttatattacaacttccccatccaatttgattatcaagtctgtgctacctgctgattcgggaaaaatgtagagcatcacgatttgctta |
4660492 |
T |
|
| Q |
246 |
tgattccgctatttcagcttcatcaatttcat |
277 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |
|
|
| T |
4660493 |
tgattccgctattttagcttcatcaatttcat |
4660524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 87; Significance: 9e-42; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 146 - 276
Target Start/End: Original strand, 20558 - 20688
Alignment:
| Q |
146 |
cagttgagttgcttatattacagcttccccatccaatttgattatcaagtctgtgctacctgctgattcgggaaaaatgtagagcatcacgatttgctta |
245 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||| |||||||||| || |||| |||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
20558 |
cagtggagttgcttatattacaacttccccatccaatttgataatcaagtctgggccacctcctgatttgggaaaaatgtagagcatcccgatttgctta |
20657 |
T |
|
| Q |
246 |
tgattccgctatttcagcttcatcaatttca |
276 |
Q |
| |
|
|||||||||||||| ||||| ||||| |||| |
|
|
| T |
20658 |
tgattccgctattttagctttatcaaattca |
20688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 146 - 226
Target Start/End: Original strand, 7691 - 7771
Alignment:
| Q |
146 |
cagttgagttgcttatattacagcttccccatccaatttgattatcaagtctgtgctacctgctgattcgggaaaaatgta |
226 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
7691 |
cagttgagttgcttatattacaacttccccctccgatttgattatcaagtctgtgctacctcctgattcaggaaaaatgta |
7771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University