View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_13 (Length: 439)
Name: NF8905A_low_13
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 37444024 - 37444433
Alignment:
| Q |
1 |
agcttactaaatgagataagcgctttttagtgttcaaatacacacatattgatacattttctacttatttcagtaagctttccaaaaatagcttataatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
37444024 |
agcttactaaatgagataagcgctttttagtgttcaaatacacacatattgata------------------gtaagctttccaaaaatagcttataatt |
37444105 |
T |
|
| Q |
101 |
ttggttcaaaattggtttcactcactctaccctctcttttgcaccatcgctcactcaatcctccttttaacaacagttaccctagctaagtcaatggttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
37444106 |
ttggttcaaaattggtttcactcactctaccctctcttttgcaccatcgctcactcaatcctccttttaacaacagttaccctagctaagtcaatgtttt |
37444205 |
T |
|
| Q |
201 |
taaacaagtaatttgtcaaaccctcgctgctaatattaaaaatgttcctcacactctcagaccaacatataaagcattaataatttccattgaaaaacaa |
300 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
37444206 |
taaacaagtaatttgtcaaaccctcactgctaatattaaaaatgttcctcacactctcagaccaaaatataaagcattaataatttccattgaaaaacaa |
37444305 |
T |
|
| Q |
301 |
caaaaaagcacaacaatcttgaagtccaaatgcagaaaggtaattaccgttgccaccacatcgttcacaggacaccggatcaccctgcaaaatcccatca |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
37444306 |
caaaaaagcacaacaatcttgaagtccaaatgcagaaagataattaccgttgccaccacatcgctcacaggacaccggatcaccctgcaaaatcccatca |
37444405 |
T |
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| Q |
401 |
ctcgttaccaaaagtccaaaacaaagta |
428 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
37444406 |
ctcgttaccaaaagtccaaaacaaagta |
37444433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 44 - 196
Target Start/End: Complemental strand, 7492676 - 7492523
Alignment:
| Q |
44 |
acatattgatacattttctacttatttcagtaagctttccaaaaa-----tagcttataattttggttcaaaattggtttcactcactctaccctctctt |
138 |
Q |
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||||||||||| ||||||||||| |||| |||||||||||||| |||| |||||||| |||||||||||||||||| || || |||||||| |
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| T |
7492676 |
acatattgataatttttctacttaattcaataagctttccaaaatactactagcctataatttaggttcaaaattggtttcattc----tatcctctctt |
7492581 |
T |
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| Q |
139 |
ttgcaccatcgctcactcaatcctccttttaacaacagttaccctagctaagtcaatg |
196 |
Q |
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||||||||| |||||||||||||||||||||||||||| || | |||| ||||||||| |
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| T |
7492580 |
ttgcaccattgctcactcaatcctccttttaacaacagctatcttagccaagtcaatg |
7492523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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