View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_130 (Length: 276)
Name: NF8905A_low_130
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_130 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 7 - 264
Target Start/End: Original strand, 35354264 - 35354525
Alignment:
| Q |
7 |
tgtaccatgtcatatttccttttatgttgatcagaatgctacacaaccagattcggatttctatttcacgttaccaaactgctaaaggaaaaagcaagat |
106 |
Q |
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| T |
35354264 |
tgtaccatgtcatatttccttttatgttgatcagaatgctacacaaccagatttggatttctatttcacgttaccaaactgctaaaggaaaaagcaagat |
35354363 |
T |
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| Q |
107 |
tgttgacaaaggccttgaattcgaacaagttgatagagaaaccaattggttagttccaa----nnnnnnnnnnnnnnnccctttaaataatactctttct |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
35354364 |
tgttgacaaaggccttgaattcgaacaagttgatagagaaaccaattggttagttccaattttttttttttttattttccctttaaataatactttttct |
35354463 |
T |
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| Q |
203 |
attaaacattaatctatgttaagattttgactgtgcggcatttgcagggatgatcaaatatt |
264 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
35354464 |
attaaacattaatctatgttaagattttgactgtttggcatttgcagggatgatcaaatatt |
35354525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 16 - 165
Target Start/End: Original strand, 35369307 - 35369456
Alignment:
| Q |
16 |
tcatatttccttttatgttgatcagaatgctacacaaccagattcggatttctatttcacgttaccaaactgctaaaggaaaaagcaagattgttgacaa |
115 |
Q |
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|||||| ||||||||| ||| |||||||||||||||| |||||| |||||||||| ||||| || ||||||||| ||| |||||||| ||||||||||| |
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| T |
35369307 |
tcatatgtccttttatattggtcagaatgctacacaatcagatttggatttctatctcacgatatgaaactgctagaggcaaaagcaaaattgttgacaa |
35369406 |
T |
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| Q |
116 |
aggccttgaattcgaacaagttgatagagaaaccaattggttagttccaa |
165 |
Q |
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| T |
35369407 |
aagccttgaatttgaacaagtcgatagagaaaccaattggttaattccaa |
35369456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 148
Target Start/End: Original strand, 35378191 - 35378323
Alignment:
| Q |
16 |
tcatatttccttttatgttgatcagaatgctacacaaccagattcggatttctatttcacgttaccaaactgctaaaggaaaaagcaagattgttgacaa |
115 |
Q |
| |
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|||||||||||||| ||| |||||||||||||||| || ||| ||| |||| | ||||| || |||||||||||||| |||| || ||||||||||| |
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| T |
35378191 |
tcatatttccttttgcattggtcagaatgctacacaatcaaatttggacttctgtctcacgctatcaaactgctaaaggcaaaaacagaattgttgacaa |
35378290 |
T |
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| Q |
116 |
aggccttgaattcgaacaagttgatagagaaac |
148 |
Q |
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| T |
35378291 |
aggccttgaattcgaacaagtcgacagagaaac |
35378323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 19683642 - 19683783
Alignment:
| Q |
16 |
tcatatttccttttatgttgatcagaatgctacacaaccagattcggatttctatttcacgttaccaaactgctaaaggaaaaagcaagattgttgacaa |
115 |
Q |
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||||||| |||| ||| ||| ||||||||||||| || ||||| |||||||||| ||||| ||||||||||||||||||||||| | ||||||||||| |
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| T |
19683642 |
tcatattcccttatatattggtcagaatgctacataatcagatatggatttctatctcacgctaccaaactgctaaaggaaaaagaagaattgttgacaa |
19683741 |
T |
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| Q |
116 |
aggccttgaattcgaacaagttgatagagaaaccaattggtt |
157 |
Q |
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|||||| |||||||| ||||| || ||||||||||||||||| |
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| T |
19683742 |
aggcctggaattcgaccaagtcgacagagaaaccaattggtt |
19683783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 19632701 - 19632560
Alignment:
| Q |
16 |
tcatatttccttttatgttgatcagaatgctacacaaccagattcggatttctatttcacgttaccaaactgctaaaggaaaaagcaagattgttgacaa |
115 |
Q |
| |
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|||||||||||| |||||| | ||||||||||||| |||||| |||||||||| ||||| || |||||||||||||| |||| || ||||||||||| |
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| T |
19632701 |
tcatatttccttatatgtttgtgagaatgctacacagccagatctggatttctatctcacgctatcaaactgctaaaggcaaaaacagaattgttgacaa |
19632602 |
T |
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| Q |
116 |
aggccttgaattcgaacaagttgatagagaaaccaattggtt |
157 |
Q |
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| |||| |||||||||||||| || ||||||||||| ||||| |
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| T |
19632601 |
atgcctagaattcgaacaagtcgacagagaaaccaactggtt |
19632560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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