View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_137 (Length: 270)
Name: NF8905A_low_137
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_137 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 12 - 270
Target Start/End: Original strand, 32628910 - 32629172
Alignment:
| Q |
12 |
atgaataattctactatcttttattgatgaatatgtagttgtcatttcaaattcttatttacctcaaccaaaaaacgatgtgtcatcaatatattaatgt |
111 |
Q |
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| T |
32628910 |
atgaataattctactatcttttattgatgaatatgtagttgtcatgtcaaattcttatttacctcaaccaagaaacgatgtgtcatcaatatattaatat |
32629009 |
T |
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| Q |
112 |
atatgatccaaacatttctcttacaaagttatg----tataaaatacctgaactaaggagttgtttgcatagctggtttctccaacgcctccattcatgt |
207 |
Q |
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| T |
32629010 |
atgtgatccaaacatttctcttacaaagttatgtatgtataaaatacctgaactaaggagttgtttgcatagctggtttctccaacgcctccattcatgt |
32629109 |
T |
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| Q |
208 |
gtagtaccttcgctacttccatatatacctgtttcttctatctttctttcagaatacttttga |
270 |
Q |
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| T |
32629110 |
gtagtaccttagctacttccatatatacctgtttcttctatctttctttcagaatacttttga |
32629172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 151 - 208
Target Start/End: Original strand, 32710112 - 32710169
Alignment:
| Q |
151 |
atacctgaactaaggagttgtttgcatagctggtttctccaacgcctccattcatgtg |
208 |
Q |
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| T |
32710112 |
atacctgaactaaggagttgtttgcatagcttgcttctccaacacctccattcatgtg |
32710169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 229
Target Start/End: Original strand, 32705168 - 32705244
Alignment:
| Q |
153 |
acctgaactaaggagttgtttgcatagctggtttctccaacgcctccattcatgtgtagtaccttcgctacttccat |
229 |
Q |
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| T |
32705168 |
acctgaagtaaggagttatctgcataacttgcatctccagcgcctccattcatgtgtagcacctttgctaattccat |
32705244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 27737613 - 27737678
Alignment:
| Q |
145 |
tataaaatacctgaactaaggagttgtttgcatagctggtttctccaacgcctccattcatgtgta |
210 |
Q |
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| T |
27737613 |
tataatatacctgaagtaaggagttgtttgcatagcttgcttctgcaaggcttccattcatgtgta |
27737678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 229
Target Start/End: Original strand, 5812169 - 5812248
Alignment:
| Q |
150 |
aatacctgaactaaggagttgtttgcatagctggtttctccaacgcctccattcatgtgtagtaccttcgctacttccat |
229 |
Q |
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| T |
5812169 |
aatacctgaagcaaggagttgtttgcatagcttgcttcttcaacacttccattcatgggtagtacttgagctacttccat |
5812248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 8028773 - 8028711
Alignment:
| Q |
152 |
tacctgaactaaggagttgtttgcatagctggtttctccaacgcctccattcatgtgtagtac |
214 |
Q |
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| T |
8028773 |
tacctgaagtaaggagttatttgaatagcttgtttctccaattcctccattcatgtggagtac |
8028711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 213
Target Start/End: Original strand, 21945064 - 21945124
Alignment:
| Q |
153 |
acctgaactaaggagttgtttgcatagctggtttctccaacgcctccattcatgtgtagta |
213 |
Q |
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| T |
21945064 |
acctgaagtgaggagttgtttgcatagcttgcttcatcgacgcctccattcatgtgtagta |
21945124 |
T |
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