View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8905A_low_142 (Length: 263)

Name: NF8905A_low_142
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8905A_low_142
NF8905A_low_142
[»] chr2 (2 HSPs)
chr2 (6-262)||(3552171-3552416)
chr2 (233-261)||(4159846-4159874)
[»] chr7 (3 HSPs)
chr7 (6-258)||(34935117-34935370)
chr7 (37-226)||(25617158-25617348)
chr7 (191-262)||(37573414-37573484)
[»] chr1 (6 HSPs)
chr1 (11-262)||(40213744-40213996)
chr1 (11-133)||(17895153-17895275)
chr1 (199-262)||(52838547-52838610)
chr1 (208-261)||(14500931-14500984)
chr1 (181-257)||(12437569-12437645)
chr1 (200-262)||(1609265-1609327)
[»] chr4 (1 HSPs)
chr4 (41-262)||(19585867-19586089)
[»] chr8 (5 HSPs)
chr8 (90-262)||(29960038-29960211)
chr8 (14-135)||(36017450-36017571)
chr8 (188-250)||(31441724-31441786)
chr8 (190-262)||(11958706-11958778)
chr8 (188-262)||(36017374-36017448)
[»] chr6 (3 HSPs)
chr6 (190-262)||(2900809-2900881)
chr6 (12-135)||(2900885-2901008)
chr6 (220-262)||(15559580-15559622)


Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 6 - 262
Target Start/End: Original strand, 3552171 - 3552416
Alignment:
Q  6 gtttggtgtttcacttgcaaggtggatgtgattcatttttggctttgtttttctaattccattacagatttgttgagatccgcggggtttaaaagtttcg 105  Q
    |||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||    
T  3552171 gtttcgtgtttcacttgcaagatggatgcgattcatttttggctttgtttttctaattccattacagatttgttgagatcc-----------aagtttcg 3552259  T
Q  106 ggattgcatcagaagtgcaagagaagatggtcacacatcggaagagaaggttcggtttcgacaaaatttcaatcatgtgtactctgtggttttgtatccc 205  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  3552260 ggattgcatcagaagtgcaagagaagatggtcacacgtcggaagagaaggttcggtttcgaaaaaatttcaatcatgtgtactctgtggttttgtatccc 3552359  T
Q  206 aatcatccttttgtttgacatgggagggtgtggactcgaaagagttgttaatgcttg 262  Q
    | ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  3552360 agtcatccttttgtttgacatgggagggtgtggactcgaaagagtcgttaatacttg 3552416  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 261
Target Start/End: Original strand, 4159846 - 4159874
Alignment:
Q  233 gtgtggactcgaaagagttgttaatgctt 261  Q
    |||||||||||||||||||||||||||||    
T  4159846 gtgtggactcgaaagagttgttaatgctt 4159874  T

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Target: chr7 (Bit Score: 114; Significance: 7e-58; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 6 - 258
Target Start/End: Original strand, 34935117 - 34935370
Alignment:
Q  6 gtttggtgtttcacttgcaaggtggatgtgattcatttttggctttgtttttctaattccattacagatttgttgagatccgcggggtttaaaagtttcg 105  Q
    |||| |||||| ||||||||| ||| ||   ||||||||||||||||||||  | | ||||||||| ||||||||||||| || |||||| |||||||||    
T  34935117 gtttcgtgttttacttgcaagatggttgcagttcatttttggctttgttttcttgactccattacaaatttgttgagatctgcagggtttcaaagtttcg 34935216  T
Q  106 ggattgcatcagaagtgcaagagaagatgg-tcacacatcggaagagaaggttcggtttcgacaaaatttcaatcatgtgtactctgtggttttgtatcc 204  Q
    ||||||  ||||  |||||||||||||||| |||||| |||||||| ||||||||||||||| | |||||  ||| |||||||| || ||||||||||||    
T  34935217 ggattgtgtcagtcgtgcaagagaagatgggtcacacgtcggaagataaggttcggtttcgatagaattttgatcctgtgtactttgcggttttgtatcc 34935316  T
Q  205 caatcatccttttgtttgacatgggagggtgtggactcgaaagagttgttaatg 258  Q
    || ||||||||||||||||| ||||| | ||||||||||||||||| |||||||    
T  34935317 cagtcatccttttgtttgacgtgggatgatgtggactcgaaagagtcgttaatg 34935370  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 37 - 226
Target Start/End: Complemental strand, 25617348 - 25617158
Alignment:
Q  37 ttcatttttggctttgtttttctaattccattacagatttgttgagatccgcggggtttaaaagtttcgggattgcatcagaagtgcaagagaagat-gg 135  Q
    ||||||||||||||||||||  | ||||||||||| |||||||||| ||  | ||||||  ||||||||| ||||  ||||  |||||| ||||||| ||    
T  25617348 ttcatttttggctttgttttcttcattccattacatatttgttgagttctacagggtttttaagtttcggtattgtgtcagtcgtgcaaaagaagatggg 25617249  T
Q  136 tcacacatcggaagagaaggttcggtttcgacaaaatttcaatcatgtgtactctgtggttttgtatcccaatcatccttttgtttgacat 226  Q
    |||||| | |||| |||||||||  |||||  ||| |||  |||||||||||| ||||||||||||||| | |||||||| | ||||||||    
T  25617248 tcacacgttggaatagaaggttcaatttcggaaaatttttgatcatgtgtactatgtggttttgtatcctagtcatccttctatttgacat 25617158  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 262
Target Start/End: Complemental strand, 37573484 - 37573414
Alignment:
Q  191 gtggttttgtatcccaatcatccttttgtttgacatgggagggtgtggactcgaaagagttgttaatgcttg 262  Q
    |||||| ||||||||| ||||| | ||| |||||||||||   ||||||||||||||||| |||||||||||    
T  37573484 gtggttatgtatcccagtcatc-tgttgattgacatgggactatgtggactcgaaagagtcgttaatgcttg 37573414  T

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Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 11 - 262
Target Start/End: Original strand, 40213744 - 40213996
Alignment:
Q  11 gtgtttcacttgcaaggtggatgtgattcatttttggctttgtttttctaattccattacagatttgttgagatccgcggggtttaaaagtttcgggatt 110  Q
    |||||| ||||||||| ||| || | ||||||||||||||||||||  | ||||||||||||||||||||||||| || |||||| ||||||||||||||    
T  40213744 gtgtttaacttgcaagatggctgcggttcatttttggctttgttttcttgattccattacagatttgttgagatctgcagggtttcaaagtttcgggatt 40213843  T
Q  111 gcatcagaagtgcaagagaagat-ggtcacacatcggaagagaaggttcggtttcgacaaaatttcaatcatgtgtactctgtggttttgtatcccaatc 209  Q
    ||  | |  |||||||| ||||| ||| |||  |||||||||||||||| ||||||||| |||||| ||| |||||||| ||| ||||||||||| | ||    
T  40213844 gcgcctgtcgtgcaagaaaagataggttacaagtcggaagagaaggttctgtttcgacataatttcgatcttgtgtactttgtagttttgtatcctagtc 40213943  T
Q  210 atccttttgtttgacatgggagggtgtggactcgaaagagttgttaatgcttg 262  Q
    |||||| | ||| |||| ||| ||||||| | ||| ||||| |||||| ||||    
T  40213944 atccttatttttaacataggacggtgtgggcacgatagagtcgttaattcttg 40213996  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 11 - 133
Target Start/End: Original strand, 17895153 - 17895275
Alignment:
Q  11 gtgtttcacttgcaaggtggatgtgattcatttttggctttgtttttctaattccattacagatttgttgagatccgcggggtttaaaagtttcgggatt 110  Q
    |||||||||||||| | ||| |||| |||||||||  |||||||||||| ||||||||  ||||||||||||||  ||  ||||| |||||||| |||||    
T  17895153 gtgtttcacttgcacgatggttgtggttcattttttactttgtttttctgattccattcaagatttgttgagatttgcaaggtttcaaagtttcaggatt 17895252  T
Q  111 gcatcagaagtgcaagagaagat 133  Q
    || |||   ||||||||||||||    
T  17895253 gcgtcaatcgtgcaagagaagat 17895275  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 262
Target Start/End: Original strand, 52838547 - 52838610
Alignment:
Q  199 gtatcccaatcatccttttgtttgacatgggagggtgtggactcgaaagagttgttaatgcttg 262  Q
    ||||||| || |||||||||||||||||||||  |||| |||| |||||||| |||||||||||    
T  52838547 gtatcccgattatccttttgtttgacatgggaatgtgtagacttgaaagagtcgttaatgcttg 52838610  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 14500931 - 14500984
Alignment:
Q  208 tcatccttttgtttgacatgggagggtgtggactcgaaagagttgttaatgctt 261  Q
    ||||||||||| |||||||||||  ||||||| |||||||||| ||||||||||    
T  14500931 tcatccttttgattgacatgggattgtgtggattcgaaagagtcgttaatgctt 14500984  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 257
Target Start/End: Original strand, 12437569 - 12437645
Alignment:
Q  181 tgtgtactctgtggttttgtatcccaatcatccttttgtttgacatgggagggtgtggactcgaaagagttgttaat 257  Q
    |||||||| |||||||| |||| | | |||||||||||||||||||| ||  || |||||| |||||||| ||||||    
T  12437569 tgtgtactatgtggtttcgtattctagtcatccttttgtttgacatgagactgtatggacttgaaagagtcgttaat 12437645  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 262
Target Start/End: Original strand, 1609265 - 1609327
Alignment:
Q  200 tatcccaatcatccttttgtttgacatgggagggtgtggactcgaaagagttgttaatgcttg 262  Q
    ||||||||||||||| ||| |||||||||||  || || |||||||||||| || ||||||||    
T  1609265 tatcccaatcatcctgttgattgacatgggactgtatgaactcgaaagagtcgtcaatgcttg 1609327  T

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Target: chr4 (Bit Score: 87; Significance: 9e-42; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 41 - 262
Target Start/End: Complemental strand, 19586089 - 19585867
Alignment:
Q  41 tttttggctttgtttttctaattccattacagatttgttgagatccgcggggtttaaaagtttcgggattgcatcagaagtgcaagagaagatgg-tcac 139  Q
    |||||||||||||||| |||||||||||||| |||| || ||||| || |||||| ||||||||| ||||   | ||  |||  ||||||||||| ||||    
T  19586089 tttttggctttgttttcctaattccattacaaatttttttagatctgcagggtttcaaagtttcgagattatgttagtcgtgttagagaagatgggtcac 19585990  T
Q  140 acatcggaagagaaggttcggtttcgacaaaatttcaatcatgtgtactctgtggttttgtatcccaatcatccttttgtttgacatgggagggtgtgga 239  Q
    || |||||||||||||||||||||| ||| |||||| ||| |||||||| ||||||||| ||||| | | ||| ||  ||||||||| ||| ||||||||    
T  19585989 acgtcggaagagaaggttcggtttccacataatttcgatcttgtgtactatgtggttttatatcctagttatcattcggtttgacataggacggtgtgga 19585890  T
Q  240 ctcgaaagagttgttaatgcttg 262  Q
    ||||||||||| |||||||||||    
T  19585889 ctcgaaagagtcgttaatgcttg 19585867  T

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Target: chr8 (Bit Score: 82; Significance: 8e-39; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 90 - 262
Target Start/End: Complemental strand, 29960211 - 29960038
Alignment:
Q  90 gggtttaaaagtttcgggattgcatcagaagtgcaagagaagatg-gtcacacatcggaagagaaggttcggtttcgacaaaatttcaatcatgtgtact 188  Q
    |||||| |||||||||||||||| ||||  ||||||||||||||| ||||||| | | |||||||||||| |||| |||| |||||  ||| ||||||||    
T  29960211 gggtttcaaagtttcgggattgcgtcagtcgtgcaagagaagatgagtcacacgttgaaagagaaggttcagttttgacataattttgatcttgtgtact 29960112  T
Q  189 ctgtggttttgtatcccaatcatccttttgtttgacatgggagggtgtggactcgaaagagttgttaatgcttg 262  Q
    |||||||||||||||| | |||||||| |||||||||| ||| |||||| |||||||||||| |||||| ||||    
T  29960111 ctgtggttttgtatcctagtcatccttctgtttgacataggacggtgtgaactcgaaagagtcgttaatacttg 29960038  T

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Target: chr8; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 14 - 135
Target Start/End: Complemental strand, 36017571 - 36017450
Alignment:
Q  14 tttcacttgcaaggtggatgtgattcatttttggctttgtttttctaattccattacagatttgttgagatccgcggggtttaaaagtttcgggattgca 113  Q
    ||||| ||||||| |||||| | |||||||||| ||||||||| || ||||||||||||||||||||||||| || |||||| |||||||| |||||||     
T  36017571 tttcaattgcaagatggatgcggttcatttttgactttgttttcctgattccattacagatttgttgagatctgcagggtttcaaagtttcaggattgcg 36017472  T
Q  114 tcagaagtgcaagagaagatgg 135  Q
    ||||  ||||||| ||||||||    
T  36017471 tcagtcgtgcaagggaagatgg 36017450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 250
Target Start/End: Complemental strand, 31441786 - 31441724
Alignment:
Q  188 tctgtggttttgtatcccaatcatccttttgtttgacatgggagggtgtggactcgaaagagt 250  Q
    |||||||||| |||||| | |||||| |||| ||||||||||| |||||||||||||||||||    
T  31441786 tctgtggtttcgtatcctagtcatccctttgattgacatgggatggtgtggactcgaaagagt 31441724  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 190 - 262
Target Start/End: Original strand, 11958706 - 11958778
Alignment:
Q  190 tgtggttttgtatcccaatcatccttttgtttgacatgggagggtgtggactcgaaagagttgttaatgcttg 262  Q
    ||||||||||||||| | |||||  |||| ||||||| |||  |||||||||||||||||| |||||||||||    
T  11958706 tgtggttttgtatcctattcatctgtttgattgacattggactgtgtggactcgaaagagtcgttaatgcttg 11958778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 262
Target Start/End: Complemental strand, 36017448 - 36017374
Alignment:
Q  188 tctgtggttttgtatcccaatcatccttttgtttgacatgggagggtgtggactcgaaagagttgttaatgcttg 262  Q
    ||||||| ||||||||| | ||||| || | |||||||| |||  |||||| ||||||||||| |||||||||||    
T  36017448 tctgtggatttgtatcctagtcatctttctatttgacataggacagtgtgggctcgaaagagtcgttaatgcttg 36017374  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 262
Target Start/End: Complemental strand, 2900881 - 2900809
Alignment:
Q  190 tgtggttttgtatcccaatcatccttttgtttgacatgggagggtgtggactcgaaagagttgttaatgcttg 262  Q
    ||||||||||||||| | |||||||| | |||||||| ||| |||||||  |||||||||| | |||||||||    
T  2900881 tgtggttttgtatcctagtcatccttctatttgacataggacggtgtgggttcgaaagagtcgctaatgcttg 2900809  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 135
Target Start/End: Complemental strand, 2901008 - 2900885
Alignment:
Q  12 tgtttcacttgcaaggtggatgtgattcatttttggctttgtttttctaattccattacagatttgttgagatccgcggggtttaaaagtttcgggattg 111  Q
    ||||||| ||||||  ||| || | ||||||||||||||  |||| ||||||| |||| ||||||| |||||||  | || ||| |||||||| ||| ||    
T  2901008 tgtttcaattgcaaaatggctgcggttcatttttggcttgtttttcctaattctattatagatttgctgagatctccaggatttcaaagtttcaggaatg 2900909  T
Q  112 catcagaagtgcaagagaagatgg 135  Q
    | ||||  ||||||| ||||||||    
T  2900908 cgtcagccgtgcaagggaagatgg 2900885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 262
Target Start/End: Complemental strand, 15559622 - 15559580
Alignment:
Q  220 ttgacatgggagggtgtggactcgaaagagttgttaatgcttg 262  Q
    |||||||||||  |||||||||||||||||| |||||||||||    
T  15559622 ttgacatgggactgtgtggactcgaaagagtcgttaatgcttg 15559580  T

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