View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_144 (Length: 262)
Name: NF8905A_low_144
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_144 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 8 - 255
Target Start/End: Original strand, 45643012 - 45643255
Alignment:
| Q |
8 |
tggtgttgcagaaggagcagcaaaagaaggcttaaccttaacaaagagtttcatgccaaatgtgcaatgtccaggaatagcacatatgaagtaatgtgtt |
107 |
Q |
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| T |
45643012 |
tggtgttgcagaaggagcagcagaagaaggcttaaccttaacaaagagtttcatgccaaatgtgcaatgtccaggaatagcacatatgaagtaatgtgtt |
45643111 |
T |
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| Q |
108 |
cccgcttctttgaggggaatggttgtggcaccactgctgtcagtactaattgaatttccagttgtgcatgattgatagtcactttccctaacttcatcca |
207 |
Q |
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| T |
45643112 |
cccgcttctttgaggggaatggttgtggcaccgctactgtctgtactaattgaatttccagttgtgcatgatttatagtcactttctttaacttcatcca |
45643211 |
T |
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| Q |
208 |
ctgtgtgccacccagcttcatagttgaacactgtcaataataaagtta |
255 |
Q |
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| T |
45643212 |
ctgtgtg---cccagctacatagttgaacactgtc-ataataaagtta |
45643255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 41 - 255
Target Start/End: Complemental strand, 45703282 - 45703063
Alignment:
| Q |
41 |
aaccttaacaaagagtttcatgccaaa---tgtgcaatgtccaggaatagcacatatgaagtaatgtgttcccgcttctttgaggggaatggttgtggca |
137 |
Q |
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| T |
45703282 |
aaccttaacagagagtttcatgccaccacttatgcaatgtacaggaacagcacatatgaagtaatgagttcctgcttttttgaggggaatggttgtggca |
45703183 |
T |
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| Q |
138 |
ccactgctgtcagtactaattgaatttccagttgtgcatgattgatagtcactttccctaacttcatccactgtgtgccacccagcttcatagttgaaca |
237 |
Q |
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| T |
45703182 |
ccactaccgtctgtactaattgaatttctagttgtgcatgattgatagtcactttccctaacttcatccactgtgtgccacccagcttcatagttgaaca |
45703083 |
T |
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| Q |
238 |
ctgtc--aataataaagtta |
255 |
Q |
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| T |
45703082 |
ctgtcataataataaagtta |
45703063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 31 - 243
Target Start/End: Original strand, 45650299 - 45650508
Alignment:
| Q |
31 |
aagaaggcttaaccttaacaaagagtttcatgccaaatgtgcaatgtccaggaatagcacatatgaagtaatgtgttcccgcttctttgaggggaatggt |
130 |
Q |
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|||||| |||||| |||||| | |||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
45650299 |
aagaagccttaactttaacagaaagtttcatgccacctgtgcaatgtccaggaacagcacatatgaagtaatgtgttcctgctttcttgaggggaatggt |
45650398 |
T |
|
| Q |
131 |
tgtggcaccactgctgtcagtactaattgaatttccagttgtgcatgattgatagtcactttccctaacttcatccactgtgtgccacccagcttcatag |
230 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||| ||||| |
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| T |
45650399 |
tgtgggaccactgctgtcagtactaattgaatttccagttgtgcatgatttatagtcactttctttaacttcatccactgtgtg---cccagctccatag |
45650495 |
T |
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| Q |
231 |
ttgaacactgtca |
243 |
Q |
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||||| ||||||| |
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| T |
45650496 |
ttgaatactgtca |
45650508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 41 - 243
Target Start/End: Complemental strand, 45887094 - 45886889
Alignment:
| Q |
41 |
aaccttaacaaagagtttcatgccaaa---tgtgcaatgtccaggaatagcacatatgaagtaatgtgttcccgcttctttgaggggaatggttgtggca |
137 |
Q |
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|||||||||| |||||||||||||| | |||||||| |||||| |||||||||||||||||| ||||| |||| |||||||||||||||||||||| |
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| T |
45887094 |
aaccttaacagagagtttcatgccaccacttatgcaatgtacaggaacagcacatatgaagtaatgagttcctgcttttttgaggggaatggttgtggca |
45886995 |
T |
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| Q |
138 |
ccactgctgtcagtactaattgaatttccagttgtgcatgattgatagtcactttccctaacttcatccactgtgtgccacccagcttcatagttgaaca |
237 |
Q |
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| T |
45886994 |
ccactaccgtctgtactaattgaatttctagttgtgcatgaattatagtcactttcattaacttcatccactgtgtgccacccagcttcatagttgaaca |
45886895 |
T |
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| Q |
238 |
ctgtca |
243 |
Q |
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|||||| |
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| T |
45886894 |
ctgtca |
45886889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 129 - 216
Target Start/End: Original strand, 30054756 - 30054843
Alignment:
| Q |
129 |
gttgtggcaccactgctgtcagtactaattgaatttccagttgtgcatgattgatagtcactttccctaacttcatccactgtgtgcc |
216 |
Q |
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| T |
30054756 |
gttgtggcaccgctactgtctgtactaattgaatttctggttatgcatgatttatagtcactttctttaacttaatccactgtgtgcc |
30054843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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