View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_145 (Length: 262)
Name: NF8905A_low_145
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_145 |
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Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 3 - 256
Target Start/End: Original strand, 49007273 - 49007526
Alignment:
| Q |
3 |
tcgaagaatatgcatggctccacatgctcatgtatccatgtacaaggtgttgtggaaagaaggagcatatgcatctgatacaatagctgcaattgatagt |
102 |
Q |
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| T |
49007273 |
tcgaataataggcatggctccacatgctcatgtatccatgtacaaggtgttgtggaaagaaggagcatatgcatctgatacaatagctgcaattgatagt |
49007372 |
T |
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| Q |
103 |
gcaatatcagatggtgtagatgttctttcattatcattggggtttgatgaggcacctttgtatgaagatcccgtagctatagccacatttgcagctatgg |
202 |
Q |
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| T |
49007373 |
gcaatatcagatggtgtagatgttctttcattatcattggggtttgatgaggcacctttgtatgaagatcctgtagctatagccacatttgcagctatgg |
49007472 |
T |
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| Q |
203 |
agaaaaacatttttgtagctacatctgcagggaacagaggaccagtgcttgaaa |
256 |
Q |
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| T |
49007473 |
agaaaaacatttttgtatctacatctgcagggaacagaggaccagtgcttgaaa |
49007526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 74 - 203
Target Start/End: Complemental strand, 34963494 - 34963365
Alignment:
| Q |
74 |
catctgatacaatagctgcaattgatagtgcaatatcagatggtgtagatgttctttcattatcattggggtttgatgaggcacctttgtatgaagatcc |
173 |
Q |
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| T |
34963494 |
catctgatgtaatagctgcaattgacgctgcaatatccgacggtgtcgatgttatttcattatcatttggaattaatgacgtacctttgtatgaagatgc |
34963395 |
T |
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| Q |
174 |
cgtagctatagccacatttgcagctatgga |
203 |
Q |
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| T |
34963394 |
cgtagctatagcaacatttgcagctatgga |
34963365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 74 - 140
Target Start/End: Original strand, 8962358 - 8962424
Alignment:
| Q |
74 |
catctgatacaatagctgcaattgatagtgcaatatcagatggtgtagatgttctttcattatcatt |
140 |
Q |
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| T |
8962358 |
catctgacacaatagctgcaattgatgccgcaatatcagacggtgtggatgttctttcaatatcatt |
8962424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 203
Target Start/End: Original strand, 8957347 - 8957476
Alignment:
| Q |
74 |
catctgatacaatagctgcaattgatagtgcaatatcagatggtgtagatgttctttcattatcattggggtttgatgaggcacctttgtatgaagatcc |
173 |
Q |
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| T |
8957347 |
catctgatgtaatagccgcaattgacgcggcaatatcagacggtgttgatgttctttcactatcatttggtattaatgacgtgcctttgtatgacgatcc |
8957446 |
T |
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| Q |
174 |
cgtagctatagccacatttgcagctatgga |
203 |
Q |
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| T |
8957447 |
tgttgccattgcaacatttgcagctatgga |
8957476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 131
Target Start/End: Complemental strand, 8946732 - 8946675
Alignment:
| Q |
74 |
catctgatacaatagctgcaattgatagtgcaatatcagatggtgtagatgttctttc |
131 |
Q |
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| T |
8946732 |
catctgatataatggctgcaattgatgctgcaatatcggacggtgttgatgttctttc |
8946675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 233
Target Start/End: Complemental strand, 21687877 - 21687718
Alignment:
| Q |
74 |
catctgatacaatagctgcaattgatagtgcaatatcagatggtgtagatgttctttcattatcattggggtttgatgaggcacctttgtatgaagatcc |
173 |
Q |
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| T |
21687877 |
catctgatataatagctgcaattgatgctgcaatatctgacggtgttgacattctttcaatatcacttggctctgatgatcttcttttgtataaagatcc |
21687778 |
T |
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| Q |
174 |
cgtagctatagccacatttgcagctatggagaaaaacatttttgtagctacatctgcagg |
233 |
Q |
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|| || || || ||||||||||||||||| ||| |||||||| |||| |||||||| |
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| T |
21687777 |
agttgcaattgcgacatttgcagctatggaaaaaggtatttttgtgtctacttctgcagg |
21687718 |
T |
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