View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_149 (Length: 261)
Name: NF8905A_low_149
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_149 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 7 - 255
Target Start/End: Original strand, 43953608 - 43953856
Alignment:
| Q |
7 |
ccaagaatatggtcaagcctgagtgtggtttaatggcagcggctactaaacaagtgccaagagaaattcatggacggactaacttaagacaaattgtgtt |
106 |
Q |
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| T |
43953608 |
ccaagaatatggtcaagcctgaatgtggtttaatggcggcggctactaaacaagtgccaagagaaattcatggacggactaacttaagtcaaattgtgtt |
43953707 |
T |
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| Q |
107 |
ggacacaaacaagtgcatattcggatggatccaatgagacatatctatccaacaaaaggtggtggttaataaacaagtaccattataattgcccatgctg |
206 |
Q |
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| T |
43953708 |
ggacacaaacaagtgcatattcggatggatccaatgagacatatctatccaacaaaaggtggtggttaataaacaagtaccattataattgcccatgctg |
43953807 |
T |
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| Q |
207 |
ttggcaaaaaggcaaggagactagcaaagatgtctccaacagtgaggct |
255 |
Q |
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| T |
43953808 |
ttggcaaaaaggcaaggagactagcaaagatgtctccaacagtgaggct |
43953856 |
T |
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