View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_15 (Length: 429)
Name: NF8905A_low_15
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 15 - 415
Target Start/End: Original strand, 2842522 - 2842922
Alignment:
| Q |
15 |
tggacatcaagaacatcagactcagtatcataaaaggagctatgcaaatcatcacatgctcgatccttgtattcagtgtttttatccaactcttcatgtt |
114 |
Q |
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| T |
2842522 |
tggacatcaagaacatcagactcagtatcataaaaggagctatgcaaatcatcacatgctcgatccttgtattcagtgtttttatccaactcttcatgtt |
2842621 |
T |
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| Q |
115 |
ctgtattattcgtacaatcttgcttaacaataggtacagtactttcgatctgtgatggatcatcacatgtttcaaatgaaagtggcgagcttcgtttcca |
214 |
Q |
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|||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2842622 |
ctgtattattggtacaatcttgcttaacaataagtacagtactttcgatctgtgatggatcatcacatgtttcaaatgaaagtggcgagcttcgtttcca |
2842721 |
T |
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| Q |
215 |
ttcactaagccgcacctctgctgacttcgaatgcaactcgcaactttctgtcaaactcatttgcctataagtttcaagttccttttccnnnnnnngattc |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
2842722 |
ttcactaagccgcacctctgctgacttcgaatgcaactcgcaactttctgtcaaactcatttgcctaaaagtttcaagttccttttccaaaaaaagattt |
2842821 |
T |
|
| Q |
315 |
tccctttcccttcttataagaatctcttgcataatattcatctcttcttcatcataagcagctctttcttcaattaacctctcatattgtctgatgtcca |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||| || |||| |
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| T |
2842822 |
tccctttcccttcttataagaatctcttgcataatattcatctcttcttcatcataagaaactctttcttcaattaacctctcgtattgtctcatttcca |
2842921 |
T |
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| Q |
415 |
t |
415 |
Q |
| |
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| T |
2842922 |
t |
2842922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 277 - 415
Target Start/End: Original strand, 2838683 - 2838821
Alignment:
| Q |
277 |
gcctataagtttcaagttccttttccnnnnnnngattctccctttcccttcttataagaatctcttgcataatattcatctcttcttcatcataagcagc |
376 |
Q |
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|||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2838683 |
gcctataactttcaagttccttttccaaaaagagattctccttttcccttcttataagaatctcttgcataatattcatctcttcttcatcataagcagc |
2838782 |
T |
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| Q |
377 |
tctttcttcaattaacctctcatattgtctgatgtccat |
415 |
Q |
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| T |
2838783 |
tctttcttcaattaacctctcatattgtctcatttccat |
2838821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 2838500 - 2838590
Alignment:
| Q |
19 |
catcaagaacatcagactcagtatcataaaaggagctatgcaaatcatcacatgctcgatccttgtattcagtgtttttatccaactcttc |
109 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| ||||| || ||| ||||||||| || | |||||| |||| |||||| |
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| T |
2838500 |
catcaagaacatcagactcagtatcataaaaggatctatgcatatcattgcacgcttgatccttgtgttgactgttttcctccacctcttc |
2838590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 198
Target Start/End: Original strand, 2838645 - 2838679
Alignment:
| Q |
164 |
ctgtgatggatcatcacatgtttcaaatgaaagtg |
198 |
Q |
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|||||||||||||||||| |||||||||||||||| |
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| T |
2838645 |
ctgtgatggatcatcacaagtttcaaatgaaagtg |
2838679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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