View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_152 (Length: 260)
Name: NF8905A_low_152
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_152 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 3 - 251
Target Start/End: Original strand, 18314745 - 18314993
Alignment:
| Q |
3 |
actaaagaggaaaacaacataaaataaaatataaaagaaaccttcatagacccatgtagcaaaatttcttttaatgtttcacagatctaactgtattgaa |
102 |
Q |
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| T |
18314745 |
actaaagaggaaaacaacataaaataaaatataaaagaaaccttcatagacccatgtagcaaaatttcttttaatgtttcacagatctaactgtattgaa |
18314844 |
T |
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| Q |
103 |
ctttcagattccagagttttataaggtaaatgcttccgaacaaatatgagagatggacaaattaagacactactgtaacaaaaaagtactagcaattgaa |
202 |
Q |
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| T |
18314845 |
ctttcagattccagagttttataaggtaaatgcttccgaacaaatatgagagatggacaaattaagacactactgtgacaaaaaagtactagcaatcgaa |
18314944 |
T |
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| Q |
203 |
cgaattacctgcaatcgtatcttctgcacttgataaaccagatattgtt |
251 |
Q |
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| T |
18314945 |
cgaattacctgcaatcgtatcttctgcacttgataaaccagatattgtt |
18314993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 160 - 251
Target Start/End: Original strand, 18304358 - 18304450
Alignment:
| Q |
160 |
caaattaagacactactgtaacaaaaaa-gtactagcaattgaacgaattacctgcaatcgtatcttctgcacttgataaaccagatattgtt |
251 |
Q |
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| T |
18304358 |
caaattaagatactactatgacaaaaaaagcactagcaattgaacgaattacttgcgacagtatcttctgcacttgataaactagatattgtt |
18304450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 119
Target Start/End: Original strand, 18304263 - 18304295
Alignment:
| Q |
87 |
atctaactgtattgaactttcagattccagagt |
119 |
Q |
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| T |
18304263 |
atctaactgtattgaactttcagattccagagt |
18304295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 18304194 - 18304235
Alignment:
| Q |
33 |
ataaaagaaaccttcatagacccatgtagcaaaatttctttt |
74 |
Q |
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| T |
18304194 |
ataaaagaaaccttcatagagacatgtagcaaaacttctttt |
18304235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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