View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_169 (Length: 253)
Name: NF8905A_low_169
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_169 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 26 - 236
Target Start/End: Complemental strand, 37181397 - 37181187
Alignment:
| Q |
26 |
tttgtatagagagaatttggttttggatttgatgagaaggaaaggggtagtggatggtcttatatagagtgagagagatttgaaggagagttgtttggag |
125 |
Q |
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| T |
37181397 |
tttgtatagagagaatttgcttttggatttgatgagaaggaaaggggtagtggatggtcttatatagagtgagagagatttgaaggagagttgtttggag |
37181298 |
T |
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| Q |
126 |
aactataagagcttttgcaattttaagttagttcaacttcctgtgtttcactttgacaaaagcatttggttgcctacattagttataaccccaaaatagt |
225 |
Q |
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| T |
37181297 |
aactataagagcttttgcaattttaagttagttcaacttcctgtgtttcactttgacaaaagcatttggttgcctacattagttataaccccaaaatagt |
37181198 |
T |
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| Q |
226 |
ccaatgtgatg |
236 |
Q |
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| T |
37181197 |
ccaatgtgatg |
37181187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 26 - 187
Target Start/End: Original strand, 37180349 - 37180512
Alignment:
| Q |
26 |
tttgtatagagagaatttggttttggatttgatgagaaggaaaggggtagtggatggtcttatatagagtgagagagatttgaaggagagttgtttgg-a |
124 |
Q |
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| T |
37180349 |
tttgtatagagagaatttgatttgggatttgatgagaagcatagggatagtgggtggtcttatatagattgagatagatttgaaggagggtagttcggaa |
37180448 |
T |
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| Q |
125 |
gaactat-aagagcttttgcaattttaagttagttcaacttcctgtgtttcactttgacaaaag |
187 |
Q |
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| T |
37180449 |
gaaccatcaagagcttttgcaatttttagttagttcaacttattgggtttcactttgacaaaag |
37180512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 26 - 164
Target Start/End: Complemental strand, 37189505 - 37189365
Alignment:
| Q |
26 |
tttgtatagagagaatttggttttggatttgatgagaaggaaaggggtagtggatggtcttatatagagtgagagagatttgaaggagagttgtttgga- |
124 |
Q |
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| T |
37189505 |
tttgtatagagagaatttgatttgggatttgatgagaagcatagggatagtgggtgatcttatatagattgagagagatttgaaggagggtagttcggat |
37189406 |
T |
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| Q |
125 |
gaactat-aagagcttttgcaattttaagttagttcaactt |
164 |
Q |
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|||| || |||||||||||||||||| |||||||||||||| |
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| T |
37189405 |
gaaccatcaagagcttttgcaatttttagttagttcaactt |
37189365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 26 - 191
Target Start/End: Original strand, 37188021 - 37188197
Alignment:
| Q |
26 |
tttgtatagagagaatttggttttggatttgatgagaaggaaaggggtagtggatggtct--tatatagagtgagagagatttgaaggagagttgtttgg |
123 |
Q |
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| T |
37188021 |
tttgtatatagagaatttgctttgagattttatgagaaggaaaggagtagtggatggtcttatatatagagtaagcaagatttgaaggagggtagtttgg |
37188120 |
T |
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| Q |
124 |
agaacta-taagagcttttgcaatt--------ttaagttagttcaacttcctgtgtttcactttgacaaaagcatt |
191 |
Q |
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| T |
37188121 |
agaacaactacgagcttttgcaatttttatttctttagtttgtttaacttcctctgtttcactttgacaaaatcatt |
37188197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 46 - 192
Target Start/End: Original strand, 38704423 - 38704569
Alignment:
| Q |
46 |
ttttggatttgatgagaaggaaaggggtagtggatggtcttatatagagtgagagagatttgaaggagagttgtttggagaactataagagcttttgcaa |
145 |
Q |
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|||||||||| |||| ||| |||||| ||||||||||| ||||||||||| ||||||||||| | || | |||||||| |||| ||| ||||||| |
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| T |
38704423 |
ttttggattttatgaaaagcaaagggatagtggatggttttatatagagtagaagagatttgaatcaaggtagcttggagaataataaaagcatttgcaa |
38704522 |
T |
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| Q |
146 |
ttttaagttagttcaacttcctgtgtttcactttgacaaaagcattt |
192 |
Q |
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| T |
38704523 |
tcttaagttacttcaacttcctgtgttttactttcacaaaaccattt |
38704569 |
T |
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