View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_17 (Length: 424)
Name: NF8905A_low_17
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 397; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 14 - 418
Target Start/End: Original strand, 12487415 - 12487819
Alignment:
| Q |
14 |
gaaggcataggttgtgcacctgaatgcacaactaaagatttaaaatgtagttctacgactctatgctaatgctataaaagtaacttttttatctttttac |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12487415 |
gaaggcataggttgtgcacctgaatgcacaactaaagatttaaaatgtagttctacgactctatgctaatgctataaaagtaacttttttatctttttac |
12487514 |
T |
|
| Q |
114 |
ataattaaggtttgtgccttggaacatgtttattgtggacatgtggaatggaagtcactgatattattatagtttgcaactacacaaactaactagttga |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12487515 |
ataattaaggtttgtgccttggaacatgtttattgtggacatgtggaatggaagtcactgatattattatagtttgcaactacacaaactaactagttga |
12487614 |
T |
|
| Q |
214 |
atgtgagtgtgctttcaatggaaaattgacaatgcggtcttagtttgttttaaagtctgtcagtcaagttcaatacagtgttttcgaatgtcggccatgg |
313 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12487615 |
atgtgagtgtgctttcaatggaaaattgacaatgtggtcttagtttgttttaaagtctgtcagtcaagttcaatacagtgttttcgaatgtcggccatgg |
12487714 |
T |
|
| Q |
314 |
tggatattggtggctatttttgggctcgcccccatggtaaatatcggctgatgttgtaggtttttccgccataatcctctatgacggcaccacagggcag |
413 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12487715 |
tgcatattggtggctatttttgggctcgcccccatggtaaatatcggctgatgttgtaggtttttccgccataatcctctatgacggcaccacagggcag |
12487814 |
T |
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| Q |
414 |
ccagt |
418 |
Q |
| |
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||||| |
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| T |
12487815 |
ccagt |
12487819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 194 - 377
Target Start/End: Original strand, 12541412 - 12541599
Alignment:
| Q |
194 |
tacacaaactaactagttgaatgtgagtgtgctttcaatggaaaattgacaatgcggtcttagtttgttttaaagtctgtcagtcaagttcaat-----a |
288 |
Q |
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|||||||||||| || ||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| | |
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| T |
12541412 |
tacacaaactaaataattgaatgtgagtgtgcttt-aatggaaaattgacaacgtggtcttagtttgttttaaagtctgtcagtcaagttcaatacaata |
12541510 |
T |
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| Q |
289 |
cagtgttttcgaatgtcggccatggtggatattggtggctatttttgggctcgcccccatggtaaatatcggctgatgttgtaggtttt |
377 |
Q |
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||||||||||||||||||||||||| |||||| |||||| ||||||||||| |||| | | |||||||||| |||| |||||||||||| |
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| T |
12541511 |
cagtgttttcgaatgtcggccatggaggatatcggtggcgatttttgggcttgccctctttgtaaatatcgactgacgttgtaggtttt |
12541599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 14 - 120
Target Start/End: Original strand, 12541306 - 12541413
Alignment:
| Q |
14 |
gaaggcataggttgtgcacctgaatgcacaactaaagatttaaaatgtagttctacgactctatgctaatgctataaaagtaac-ttttttatcttttta |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||| |
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| T |
12541306 |
gaaggcataggttgtgcacctgaatgcacaactaaagatttaaaatgtagttctacgactctatgctaatgctattagagtaactttttttatcttttta |
12541405 |
T |
|
| Q |
113 |
cataatta |
120 |
Q |
| |
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|||||||| |
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| T |
12541406 |
cataatta |
12541413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 249 - 377
Target Start/End: Original strand, 12509274 - 12509402
Alignment:
| Q |
249 |
ggtcttagtttgttttaaagtctgtcagtcaagttcaatacagtgttttcgaatgtcggccatggtggatattggtggctatttttgggctcgcccccat |
348 |
Q |
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||||||| | ||||||||||| || ||||||||||||| | ||||| |||||| |||||||||| |||||| |||||| ||||||||||| |||||| | |
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| T |
12509274 |
ggtcttattatgttttaaagtttgagagtcaagttcaatcctgtgttatcgaatatcggccatggaggatatcggtggcgatttttgggcttgccccctt |
12509373 |
T |
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| Q |
349 |
ggtaaatatcggctgatgttgtaggtttt |
377 |
Q |
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||| |||||| |||| |||||||||||| |
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| T |
12509374 |
cgtagatatcgactgacgttgtaggtttt |
12509402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 77 - 127
Target Start/End: Original strand, 12508747 - 12508797
Alignment:
| Q |
77 |
tgctaatgctataaaagtaacttttttatctttttacataattaaggtttg |
127 |
Q |
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|||||||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
12508747 |
tgctaatgctctaaaagtaacttttttatcttttgacataattaaggtttg |
12508797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 137 - 242
Target Start/End: Original strand, 12508839 - 12508940
Alignment:
| Q |
137 |
acatgtttattgtggacatgtggaatggaagtcactgatattattatagtttgcaactacacaaactaactagttgaatgtgagtgtgctttcaatggaa |
236 |
Q |
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||||||||||| ||||| ||||||| || ||||||||||| || |||||||| || | | ||||| |||||||||| ||||||||||||||||||| |
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| T |
12508839 |
acatgtttattttggacttgtggaaatga-gtcactgatatcat---agtttgcagctgcgtagactaagtagttgaatgcgagtgtgctttcaatggaa |
12508934 |
T |
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| Q |
237 |
aattga |
242 |
Q |
| |
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|||||| |
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| T |
12508935 |
aattga |
12508940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 397
Target Start/End: Complemental strand, 34498964 - 34498884
Alignment:
| Q |
317 |
atattggtggctatttttgggctcgcccccatggtaaatatcggctgatgttgtaggtttttccgccataatcctctatga |
397 |
Q |
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|||| |||||| |||||||||||||| | |||||||||||||| ||| ||| |||| ||||| ||||||||||||||| |
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| T |
34498964 |
atatcggtggcggtttttgggctcgccgcaatggtaaatatcggtcgatattgcaggtctttccagcataatcctctatga |
34498884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 397
Target Start/End: Complemental strand, 27610489 - 27610409
Alignment:
| Q |
317 |
atattggtggctatttttgggctcgcccccatggtaaatatcggctgatgttgtaggtttttccgccataatcctctatga |
397 |
Q |
| |
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|||| |||||| |||||||||||||| | |||||||||||||| || ||| |||| ||||| ||||||||||||||| |
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| T |
27610489 |
atatcggtggcggtttttgggctcgccgcaatggtaaatatcggtcaatattgcaggtctttccagcataatcctctatga |
27610409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 407
Target Start/End: Complemental strand, 40554471 - 40554379
Alignment:
| Q |
315 |
ggatattggtggctatttttgggctcgcccccatggtaaatatcggctgatgttgtaggtttttccgccataatcctctatgacggcaccaca |
407 |
Q |
| |
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|||||| |||||| |||||||||||| || ||||| ||| ||||||||| | | ||| ||||||||||| |||| ||||||||| ||||| |
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| T |
40554471 |
ggatatcggtggcaatttttgggctctccgccatgcccaatttcggctgatatggcaggattttccgccatgatccgatatgacggcgccaca |
40554379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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