View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_170 (Length: 252)
Name: NF8905A_low_170
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_170 |
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Alignment Details
Target: chr1 (Bit Score: 136; Significance: 5e-71; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 91 - 246
Target Start/End: Original strand, 46208523 - 46208678
Alignment:
| Q |
91 |
tggattttaaatggaacaggattgctctcaacaccatatccaccattcttcatccactacccaacaacaatccgtcaattctcatctcgcaatgttcgaa |
190 |
Q |
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| T |
46208523 |
tggatttgaattggaacatgactgctctcaacaccatatccaccattcttcatccactacccaacaacaatccgtcaattctcatctcgcaatgttcgaa |
46208622 |
T |
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| Q |
191 |
gcggccaagacgaagcatgaggatcaaagtggctaccacaaagacctaacaccaaa |
246 |
Q |
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| T |
46208623 |
gcggcgaagacgaagcatgaggatcaaagtggctaccacaaagacctaacaccaaa |
46208678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 150 - 246
Target Start/End: Original strand, 48962610 - 48962714
Alignment:
| Q |
150 |
cccaacaacaatccgtcaattctcatctcgcaatgttcgaagcggccaag---------acgaagcatgaggatcaaagtggctaccacaaagacctaac |
240 |
Q |
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| T |
48962610 |
cccaacaacaatccgtcaattctcatctcgcaatcctcgaagcggcaaagacgaatggaacgaagcatgggaatcaaagtggctaccac-aagacctaac |
48962708 |
T |
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| Q |
241 |
accaaa |
246 |
Q |
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| T |
48962709 |
accaaa |
48962714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 46208453 - 46208493
Alignment:
| Q |
21 |
ttaaaaataaatgaaaatgtcatgtgtgtaactcacaattt |
61 |
Q |
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| T |
46208453 |
ttaaaaataaatgaaaatgcgatgtgtgtaactcacaattt |
46208493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 39
Target Start/End: Complemental strand, 46209418 - 46209389
Alignment:
| Q |
10 |
taatttttgaattaaaaataaatgaaaatg |
39 |
Q |
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| T |
46209418 |
taatttttgaattaaaaataaatgaaaatg |
46209389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 200
Target Start/End: Original strand, 17367989 - 17368039
Alignment:
| Q |
150 |
cccaacaacaatccgtcaattctcatctcgcaatgttcgaagcggccaaga |
200 |
Q |
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| T |
17367989 |
cccaacaacaatccgtcaattctcatctcgcaatcctcgaagcggcgaaga |
17368039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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