View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8905A_low_175 (Length: 250)

Name: NF8905A_low_175
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8905A_low_175
NF8905A_low_175
[»] chr8 (2 HSPs)
chr8 (1-233)||(24782592-24782824)
chr8 (1-233)||(35198168-35198400)
[»] chr1 (4 HSPs)
chr1 (1-233)||(8057518-8057750)
chr1 (1-233)||(49575198-49575430)
chr1 (1-185)||(36027478-36027662)
chr1 (3-82)||(50955000-50955079)
[»] scaffold0012 (1 HSPs)
scaffold0012 (1-233)||(111469-111704)
[»] chr3 (1 HSPs)
chr3 (29-189)||(54814771-54814931)
[»] chr2 (1 HSPs)
chr2 (27-172)||(34566929-34567074)
[»] chr7 (1 HSPs)
chr7 (9-73)||(8033262-8033326)


Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 24782824 - 24782592
Alignment:
Q  1 tatcaatcttagggatcatcacaatgagagtattattaatagaagatataagagaaggggtaacccaaacctggttcacaaactggtatatagaatcagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24782824 tatcaatcttagggatcatcacaatgagagtattattaatagaagatataagagaaggggtaacccaaacctggttcacaaactggtatatagaatcagc 24782725  T
Q  101 aactgtgtcccaacatttttgaaaaaatatagcggggtacccatcctctcccggcgccttgtgaggattcatgtcaaaaagagctcttttacattcatta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24782724 aactgtgtcccaacatttttgaaaaaatatagcggggtacccatcctctcccggcgccttgtgaggattcatgtcaaaaagagctcttttacattcatta 24782625  T
Q  201 atttgaacatgtgcactcaaactatcatgatgt 233  Q
    |||||||||||||||||||||||||||||||||    
T  24782624 atttgaacatgtgcactcaaactatcatgatgt 24782592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 35198168 - 35198400
Alignment:
Q  1 tatcaatcttagggatcatcacaatgagagtattattaatagaagatataagagaaggggtaacccaaacctggttcacaaactggtatatagaatcagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35198168 tatcaatcttagggatcatcacaatgagagtattattaatagaagatataagagaaggggtaacccaaacctggttcacaaactggtatatagaatcagc 35198267  T
Q  101 aactgtgtcccaacatttttgaaaaaatatagcggggtacccatcctctcccggcgccttgtgaggattcatgtcaaaaagagctcttttacattcatta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35198268 aactgtgtcccaacatttttgaaaaaatatagcggggtacccatcctctcccggcgccttgtgaggattcatgtcaaaaagagctcttttacattcatta 35198367  T
Q  201 atttgaacatgtgcactcaaactatcatgatgt 233  Q
    |||||||||||||||||||||||||||||||||    
T  35198368 atttgaacatgtgcactcaaactatcatgatgt 35198400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 8057518 - 8057750
Alignment:
Q  1 tatcaatcttagggatcatcacaatgagagtattattaatagaagatataagagaaggggtaacccaaacctggttcacaaactggtatatagaatcagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8057518 tatcaatcttagggatcatcacaatgagagtattattaatagaagatataagagaaggggtaacccaaacctggttcacaaactggtatatagaatcagc 8057617  T
Q  101 aactgtgtcccaacatttttgaaaaaatatagcggggtacccatcctctcccggcgccttgtgaggattcatgtcaaaaagagctcttttacattcatta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8057618 aactgtgtcccaacatttttgaaaaaatatagcggggtacccatcctctcccggcgccttgtgaggattcatgtcaaaaagagctcttttacattcatta 8057717  T
Q  201 atttgaacatgtgcactcaaactatcatgatgt 233  Q
    |||||||||||||||||||||||||||||||||    
T  8057718 atttgaacatgtgcactcaaactatcatgatgt 8057750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 49575198 - 49575430
Alignment:
Q  1 tatcaatcttagggatcatcacaatgagagtattattaatagaagatataagagaaggggtaacccaaacctggttcacaaactggtatatagaatcagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49575198 tatcaatcttagggatcatcacaatgagagtattattaatagaagatataagagaaggggtaacccaaacctggttcacaaactggtatatagaatcagc 49575297  T
Q  101 aactgtgtcccaacatttttgaaaaaatatagcggggtacccatcctctcccggcgccttgtgaggattcatgtcaaaaagagctcttttacattcatta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49575298 aactgtgtcccaacatttttgaaaaaatatagcggggtacccatcctctcccggcgccttgtgaggattcatgtcaaaaagagctcttttacattcatta 49575397  T
Q  201 atttgaacatgtgcactcaaactatcatgatgt 233  Q
    |||||||||||||||||||||||||||||||||    
T  49575398 atttgaacatgtgcactcaaactatcatgatgt 49575430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 36027662 - 36027478
Alignment:
Q  1 tatcaatcttagggatcatcacaatgagagtattattaatagaagatataagagaaggggtaacccaaacctggttcacaaactggtatatagaatcagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36027662 tatcaatcttagggatcatcacaatgagagtattattaatagaagatataagagaaggggtaacccaaacctggttcacaaactggtatatagaatcagc 36027563  T
Q  101 aactgtgtcccaacatttttgaaaaaatatagcggggtacccatcctctcccggcgccttgtgaggattcatgtcaaaaagagct 185  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36027562 aactgtgtcctaacatttttgaaaaaatatagcggggtacccatcctctcccggcgccttgtgaggattcatgtcaaaaagagct 36027478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 50955000 - 50955079
Alignment:
Q  3 tcaatcttagggatcatcacaatgagagtattattaatagaagatataagagaaggggtaacccaaacctggttcacaaa 82  Q
    ||||| ||||| ||||||||||| || |||||||||||| |||| || ||||||||  | ||||||||||| || |||||    
T  50955000 tcaattttaggaatcatcacaataagggtattattaataaaagaaatgagagaaggatttacccaaacctgattgacaaa 50955079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 111469 - 111704
Alignment:
Q  1 tatcaatcttagggatcatcacaatgagagtattattaatagaagatataagagaaggggtaacccaaacctggttcacaaactggtatatagaatcagc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  111469 tatcaatcttagggatcatcacaatgagagtattattaatagaagatataagagaaagggtaacccaaacctggttcacaaactggtatatagaatcagc 111568  T
Q  101 aactgtgtcccaacatttttgaaaaaatatagcg---gggtacccatcctctcccggcgccttgtgaggattcatgtcaaaaagagctcttttacattca 197  Q
    |||||||||||| |||||||||||||||||||||    |||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  111569 aactgtgtcccagcatttttgaaaaaatatagcgaaaaggtatccatcctctctcggcgccttgtgaggattcatatcaaaaagagctcttttacattca 111668  T
Q  198 ttaatttgaacatgtgcactcaaactatcatgatgt 233  Q
    ||||||||||||||||||||||||||||||||||||    
T  111669 ttaatttgaacatgtgcactcaaactatcatgatgt 111704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 189
Target Start/End: Original strand, 54814771 - 54814931
Alignment:
Q  29 agtattattaatagaagatataagagaaggggtaacccaaacctggttcacaaactggtatatagaatcagcaactgtgtcccaacatttttgaaaaaat 128  Q
    ||||||||||||| |||| |||| ||||||  | ||||||||||||||  |||| |   | |  |||||| |||| |||||||||| ||  ||||||||     
T  54814771 agtattattaataaaagagataaaagaaggatttacccaaacctggttggcaaatttaaaaagggaatcaacaacggtgtcccaacgttgctgaaaaaag 54814870  T
Q  129 atagcggggtacccatcctctcccggcgccttgtgaggattcatgtcaaaaagagctcttt 189  Q
    | ||| ||||| ||||||||||| || ||||| |||||  |||||||||| | ||||||||    
T  54814871 acagcagggtagccatcctctccaggagccttatgagggctcatgtcaaataaagctcttt 54814931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 172
Target Start/End: Complemental strand, 34567074 - 34566929
Alignment:
Q  27 agagtattattaatagaagatataagagaaggggtaacccaaacctggttcacaaactggtatatagaatcagcaactgtgtcccaacatttttgaaaaa 126  Q
    ||||||||||||||  |||| |||||| ||||  ||||| |||| ||||||||| ||||||| |  || |||| ||  |||| |||||||| ||  || |    
T  34567074 agagtattattaatgtaagagataagaaaaggattaaccaaaacatggttcacatactggtacaatgactcagaaatagtgttccaacattattagaaga 34566975  T
Q  127 atatagcggggtacccatcctctcccggcgccttgtgaggattcat 172  Q
    | | ||| |||||||| || ||||| |||| ||| |||||||||||    
T  34566974 aaagagcagggtacccgtcttctccgggcgtcttatgaggattcat 34566929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 8033326 - 8033262
Alignment:
Q  9 ttagggatcatcacaatgagagtattattaatagaagatataagagaaggggtaacccaaacctg 73  Q
    ||||| ||||| ||||| || ||||||||||||||||| || ||||||||  | |||||||||||    
T  8033326 ttaggtatcataacaatcagtgtattattaatagaagagatgagagaaggatttacccaaacctg 8033262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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