View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8905A_low_178 (Length: 250)

Name: NF8905A_low_178
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8905A_low_178
NF8905A_low_178
[»] chr1 (20 HSPs)
chr1 (9-250)||(3544594-3544835)
chr1 (11-250)||(1248081-1248319)
chr1 (9-150)||(28358396-28358537)
chr1 (9-250)||(5808987-5809228)
chr1 (13-152)||(19014481-19014619)
chr1 (9-151)||(52691976-52692118)
chr1 (9-250)||(13867326-13867567)
chr1 (11-160)||(40563053-40563202)
chr1 (38-152)||(45795710-45795824)
chr1 (45-130)||(3074271-3074356)
chr1 (45-130)||(22191311-22191396)
chr1 (9-92)||(27393442-27393525)
chr1 (9-148)||(38070340-38070479)
chr1 (40-110)||(45270787-45270857)
chr1 (45-130)||(21405363-21405448)
chr1 (85-181)||(20987638-20987734)
chr1 (9-104)||(45795827-45795922)
chr1 (9-55)||(32352803-32352849)
chr1 (84-152)||(25504562-25504630)
chr1 (218-250)||(45795612-45795644)
[»] chr6 (21 HSPs)
chr6 (9-250)||(14843630-14843871)
chr6 (9-151)||(19350449-19350591)
chr6 (9-154)||(32186185-32186330)
chr6 (13-151)||(29976505-29976650)
chr6 (9-151)||(14686501-14686643)
chr6 (21-202)||(25350676-25350857)
chr6 (10-154)||(26514226-26514370)
chr6 (40-125)||(10362664-10362749)
chr6 (9-151)||(13086044-13086186)
chr6 (12-145)||(7956167-7956299)
chr6 (9-93)||(10919957-10920041)
chr6 (45-130)||(29056045-29056130)
chr6 (9-111)||(1104440-1104542)
chr6 (9-93)||(34434823-34434907)
chr6 (219-250)||(14686711-14686742)
chr6 (9-96)||(18588909-18588996)
chr6 (40-93)||(900385-900438)
chr6 (84-148)||(11060430-11060494)
chr6 (90-154)||(13938221-13938285)
chr6 (84-152)||(17078758-17078826)
chr6 (84-152)||(18051017-18051085)
[»] chr5 (17 HSPs)
chr5 (9-250)||(476619-476860)
chr5 (9-195)||(380362-380548)
chr5 (9-152)||(42259784-42259927)
chr5 (66-152)||(22176376-22176462)
chr5 (32-152)||(42039221-42039341)
chr5 (45-109)||(41590643-41590707)
chr5 (42-109)||(29572398-29572465)
chr5 (42-109)||(29573775-29573842)
chr5 (42-109)||(29575152-29575219)
chr5 (42-109)||(29576529-29576596)
chr5 (42-109)||(29577906-29577973)
chr5 (42-109)||(29579283-29579350)
chr5 (40-109)||(4297833-4297902)
chr5 (33-103)||(15862194-15862264)
chr5 (21-62)||(22437810-22437851)
chr5 (84-152)||(19513033-19513101)
chr5 (90-154)||(33170160-33170224)
[»] scaffold0043 (1 HSPs)
scaffold0043 (10-250)||(34103-34343)
[»] chr3 (21 HSPs)
chr3 (9-250)||(31675337-31675578)
chr3 (9-250)||(31920844-31921085)
chr3 (9-151)||(19875748-19875890)
chr3 (9-110)||(25024337-25024438)
chr3 (9-151)||(53941808-53941950)
chr3 (9-151)||(55367115-55367257)
chr3 (9-152)||(40513217-40513360)
chr3 (40-125)||(52250648-52250733)
chr3 (9-151)||(14307713-14307855)
chr3 (9-110)||(48930272-48930373)
chr3 (9-152)||(34829904-34830040)
chr3 (12-148)||(46190000-46190136)
chr3 (9-104)||(18381610-18381705)
chr3 (40-109)||(6825369-6825438)
chr3 (71-148)||(35537276-35537353)
chr3 (9-152)||(14863958-14864101)
chr3 (48-130)||(31547897-31547980)
chr3 (9-66)||(42807259-42807316)
chr3 (45-130)||(44888430-44888515)
chr3 (90-154)||(962737-962801)
chr3 (218-250)||(34829825-34829857)
[»] chr7 (19 HSPs)
chr7 (9-151)||(27218615-27218757)
chr7 (9-148)||(19544895-19545034)
chr7 (9-152)||(17504052-17504195)
chr7 (9-152)||(17549019-17549162)
chr7 (21-195)||(20349425-20349598)
chr7 (9-110)||(11341342-11341443)
chr7 (21-148)||(34103985-34104112)
chr7 (45-93)||(8752925-8752973)
chr7 (45-125)||(25018847-25018927)
chr7 (9-152)||(23887588-23887730)
chr7 (9-152)||(23898764-23898906)
chr7 (45-130)||(17056055-17056140)
chr7 (45-135)||(22819246-22819336)
chr7 (40-81)||(41805282-41805323)
chr7 (21-93)||(23054476-23054548)
chr7 (22-92)||(20918524-20918594)
chr7 (9-110)||(13553677-13553778)
chr7 (47-100)||(39658919-39658972)
chr7 (41-93)||(12308647-12308699)
[»] chr2 (8 HSPs)
chr2 (9-151)||(6823916-6824058)
chr2 (9-152)||(11196855-11196998)
chr2 (40-125)||(43310790-43310875)
chr2 (40-110)||(26146761-26146831)
chr2 (40-124)||(10689087-10689170)
chr2 (22-148)||(7301181-7301307)
chr2 (11-151)||(9668501-9668641)
chr2 (84-152)||(15018181-15018249)
[»] chr4 (18 HSPs)
chr4 (45-250)||(2071946-2072151)
chr4 (9-250)||(43516241-43516482)
chr4 (9-151)||(9690927-9691069)
chr4 (58-148)||(52617407-52617497)
chr4 (9-148)||(56336993-56337132)
chr4 (34-152)||(7098986-7099104)
chr4 (45-148)||(36183045-36183148)
chr4 (40-104)||(38296258-38296322)
chr4 (9-184)||(55725199-55725374)
chr4 (84-152)||(49925835-49925903)
chr4 (9-55)||(3129482-3129528)
chr4 (9-55)||(23872969-23873015)
chr4 (21-110)||(2365552-2365641)
chr4 (45-130)||(9777896-9777981)
chr4 (40-97)||(29328301-29328358)
chr4 (69-110)||(41382519-41382560)
chr4 (84-152)||(19114940-19115008)
chr4 (22-106)||(55464379-55464463)
[»] scaffold0189 (1 HSPs)
scaffold0189 (12-151)||(6593-6732)
[»] chr8 (14 HSPs)
chr8 (21-154)||(25193590-25193723)
chr8 (45-159)||(29721439-29721553)
chr8 (9-148)||(15439632-15439764)
chr8 (9-148)||(15530936-15531068)
chr8 (11-152)||(6245593-6245727)
chr8 (9-151)||(36025026-36025168)
chr8 (12-148)||(37165617-37165753)
chr8 (9-151)||(12341072-12341214)
chr8 (9-130)||(18187672-18187793)
chr8 (40-109)||(36492928-36492997)
chr8 (43-93)||(12332411-12332461)
chr8 (84-152)||(6901413-6901481)
chr8 (84-148)||(17659339-17659403)
chr8 (84-152)||(36157658-36157726)
[»] scaffold0048 (1 HSPs)
scaffold0048 (9-93)||(63792-63876)
[»] scaffold0026 (1 HSPs)
scaffold0026 (42-125)||(67611-67694)
[»] scaffold0061 (1 HSPs)
scaffold0061 (40-110)||(55208-55278)
[»] scaffold0017 (1 HSPs)
scaffold0017 (40-110)||(143356-143426)
[»] scaffold0131 (1 HSPs)
scaffold0131 (9-55)||(4049-4095)
[»] scaffold0029 (1 HSPs)
scaffold0029 (9-55)||(134347-134393)
[»] scaffold0002 (2 HSPs)
scaffold0002 (9-55)||(312174-312220)
scaffold0002 (9-55)||(327628-327674)


Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 3544594 - 3544835
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3544594 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 3544693  T
Q  109 gtacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3544694 gtacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaa 3544793  T
Q  209 tggcgtgtctacttacttttggtatgacaggtggcttggtga 250  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  3544794 tggcgtgtctacttacttttggtatgacaggtggcttggtga 3544835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 1248081 - 1248319
Alignment:
Q  11 gtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagt 110  Q
    ||||||| | || ||||| |||| || |||||||||||||||| || |||| ||||||||||||||||||| |||||||||||||||||||| | |||||    
T  1248081 gtgttggtgtatattggtggataaaggtggtttttggtataggctgttggtggcgagatatggtgaggaggtagggaggttggaggtagggg-ctggagt 1248179  T
Q  111 acttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaatg 210  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||||||| | || |||||||||||||| |||| |||| ||||  |||||||| ||||    
T  1248180 acttcatcttggtggagggaagtagtgaagattagggatggggtgggtgaagctgcggggagttggtttgaggagagggtgtcgaagagggtagggaatg 1248279  T
Q  211 gcgtgtctacttacttttggtatgacaggtggcttggtga 250  Q
    || || ||||||||||||||||||||||||||||||||||    
T  1248280 gcttggctacttacttttggtatgacaggtggcttggtga 1248319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 9 - 150
Target Start/End: Complemental strand, 28358537 - 28358396
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 108  Q
    ||||||||| || |||||||||||||||  || |||||||| |||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  28358537 tggtgttggagattgttggtagatagaggcgggttttggtacagggtgttggtggcgagatatggtgaggaggcagggaggttggaggttgggggccgga 28358438  T
Q  109 gtacttcatcttggtggaaggaagtagtgaagattagggatg 150  Q
    ||   ||||||||||||| |||||||| ||||||||||||||    
T  28358437 gtgtctcatcttggtggagggaagtagcgaagattagggatg 28358396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 5809228 - 5808987
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 108  Q
    ||||||||||| |||||||| || | || |||  | ||||||||||| || |||||| | ||||||| | |||  |||||||||||||| ||||||||||    
T  5809228 tggtgttggcggatgttggtggacaaaggtgggctctggtatagggttcttgtagcgcggtatggtgtgaaggttgggaggttggaggttgggggccgga 5809129  T
Q  109 gtacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaa 208  Q
    ||  |||||||| |||| |||||||||||||||||||||||||| | ||||| |  || ||  ||||||| || ||| |||| |||| || ||| ||       
T  5809128 gtgtttcatcttagtggcaggaagtagtgaagattagggatggggtaggtgatgcagatggaggttggttcgcagagagggtgtcgaaaaaggtgggggg 5809029  T
Q  209 tggcgtgtctacttacttttggtatgacaggtggcttggtga 250  Q
    |||| |   ||| | |||||||||||||||||||||||||||    
T  5809028 tggcattagtacattcttttggtatgacaggtggcttggtga 5808987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 152
Target Start/End: Original strand, 19014481 - 19014619
Alignment:
Q  13 gttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtac 112  Q
    ||||||| |||||||| || |||| ||| |||||||||   ||| |||| |||||||||||||||||| ||||||||||||||||  |||||||||||      
T  19014481 gttggcggatgttggtggacagaggtgggttttggtattaagtgttggtggcgagatatggtgaggagacagggaggttggaggt-tggggccggagtgt 19014579  T
Q  113 ttcatcttggtggaaggaagtagtgaagattagggatggg 152  Q
    ||| |||||||||| |||  ||||||||||||||||||||    
T  19014580 ttcttcttggtggagggagatagtgaagattagggatggg 19014619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 151
Target Start/End: Complemental strand, 52692118 - 52691976
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 108  Q
    ||||||||| | |||||||| |||||||| || || |||||||||||| |||| ||| | |||||||||||||| |||||||||| ||||| ||| ||||    
T  52692118 tggtgttggaggatgttggtggatagagaggggttctggtatagggtgttggtggcgcggtatggtgaggaggctgggaggttggtggtagagggtcgga 52692019  T
Q  109 gtacttcatcttggtggaaggaagtagtgaagattagggatgg 151  Q
    ||  ||| |||||||||| |||  ||| |||||||| ||||||    
T  52692018 gtgattcttcttggtggagggagatagcgaagattaaggatgg 52691976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 13867326 - 13867567
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 108  Q
    ||||||||||| |||||||| ||||||| |||||| ||||||||||| ||||||||  | |||||||||  ||| ||| |||||||||| |||||| |||    
T  13867326 tggtgttggcggatgttggtggatagaggtggtttatggtatagggtcctggtagctcggtatggtgagacggctgggcggttggaggttgggggcagga 13867425  T
Q  109 gtacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaa 208  Q
    ||  |||||| ||||||    || |||  ||||||||||||||| | || || |  |||||| | |||||||| ||| |||| ||||  |  |||||  |    
T  13867426 gtgtttcatcgtggtggcgaaaaatagcaaagattagggatggggtaggcgatgtagaggggggctggtttgcagagagggtgtcgaagaaagtaggaga 13867525  T
Q  209 tggcgtgtctacttacttttggtatgacaggtggcttggtga 250  Q
    |||      |||||||||||||||||||||||||||||||||    
T  13867526 tggttctagtacttacttttggtatgacaggtggcttggtga 13867567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 11 - 160
Target Start/End: Original strand, 40563053 - 40563202
Alignment:
Q  11 gtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagt 110  Q
    ||||||| | |||||||| |||||||| || || |||||||| ||  |||| ||||||||||| || ||||||| |||||||||||| |||||||||| |    
T  40563053 gtgttggaggatgttggtggatagagacgggttgtggtatagagttttggtggcgagatatggagatgaggcagagaggttggaggttgggggccggact 40563152  T
Q  111 acttcatcttggtggaaggaagtagtgaagattagggatgggatgggtga 160  Q
      ||||||||||||||  ||  ||| |||||||||||||||  |||||||    
T  40563153 gtttcatcttggtggagagagatagcgaagattagggatggagtgggtga 40563202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 152
Target Start/End: Complemental strand, 45795824 - 45795710
Alignment:
Q  38 tggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtg 137  Q
    |||||| ||||||| ||| ||||||||  | |||||||||  ||  ||| |||||||||| |||||| |||||  |||||||||||||  |||||||| |    
T  45795824 tggtttatggtataaggtcctggtagcacggtatggtgagacggttgggcggttggaggttgggggcaggagtgtttcatcttggtggcgggaagtagcg 45795725  T
Q  138 aagattagggatggg 152  Q
    |||||||||||||||    
T  45795724 aagattagggatggg 45795710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 130
Target Start/End: Complemental strand, 3074356 - 3074271
Alignment:
Q  45 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaagga 130  Q
    |||||||||||| |||||||| | |||||||||||||  |||||||||| ||| |||| |||||||  ||| || |||||||||||    
T  3074356 tggtatagggtgttggtagcgcgttatggtgaggaggatgggaggttggcggttggggaccggagtgtttcttcgtggtggaagga 3074271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 130
Target Start/End: Original strand, 22191311 - 22191396
Alignment:
Q  45 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaagga 130  Q
    |||||||||||| |||| ||| | |||||||||||||  |||||||||| ||| ||||||||||||  ||| || |||||||||||    
T  22191311 tggtatagggtgttggtggcgtgttatggtgaggaggatgggaggttggtggttgggggccggagtgtttcttcgtggtggaagga 22191396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 92
Target Start/End: Original strand, 27393442 - 27393525
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttg 92  Q
    ||||||||| |  ||||||| |||||||  ||||| ||||||| |||| |||| || || ||||||||||||||||||||||||    
T  27393442 tggtgttggaggttgttggttgatagaggaggtttatggtatatggtgttggttgctaggtatggtgaggaggcagggaggttg 27393525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 148
Target Start/End: Complemental strand, 38070479 - 38070340
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 108  Q
    |||||||||||  ||||||| |||||||  || || |||||||| ||  |||| || || |||||||||||||| ||| |||||||||| ||||| ||||    
T  38070479 tggtgttggcggttgttggtggatagaggagggttgtggtatagagttttggtggcaaggtatggtgaggaggctgggcggttggaggttgggggtcgga 38070380  T
Q  109 gtacttcatcttggtggaaggaagtagtgaagattaggga 148  Q
    ||  |||  |||||||||  ||  ||| ||||||||||||    
T  38070379 gtgtttctacttggtggagagagttagcgaagattaggga 38070340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 110
Target Start/End: Complemental strand, 45270857 - 45270787
Alignment:
Q  40 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagt 110  Q
    |||| ||||||||| |  |||| |||||||||| ||||||||  |||||||||||||| ||||||||||||    
T  45270857 gtttatggtataggattttggtggcgagatatgatgaggaggatgggaggttggaggttgggggccggagt 45270787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 130
Target Start/End: Complemental strand, 21405448 - 21405363
Alignment:
Q  45 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaagga 130  Q
    |||||||||||| |||||||  | |||||||||||||  |||||||||| ||| ||||||| ||||  ||| || |||||||||||    
T  21405448 tggtatagggtgttggtagcacgttatggtgaggaggatgggaggttggtggttgggggccagagtgtttcttcgtggtggaagga 21405363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 181
Target Start/End: Complemental strand, 20987734 - 20987638
Alignment:
Q  85 ggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgc 181  Q
    |||||||||||||||||||| |||||  |||   |||||||| |||  ||| |||||||||||||||||| || ||   ||||| ||||||||||||    
T  20987734 ggaggttggaggtagggggcaggagtggttctctttggtggagggagatagcgaagattagggatgggataggcgattctgaggagagttggtttgc 20987638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 104
Target Start/End: Complemental strand, 45795922 - 45795827
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggc 104  Q
    ||||||||||| |||||||| |||| || |||||| ||||||| ||| ||||||||  | |||||||||  ||  ||| |||||||||| ||||||    
T  45795922 tggtgttggcggatgttggtggataaaggtggtttatggtataaggtcctggtagcacggtatggtgagacggttgggcggttggaggttgggggc 45795827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 32352803 - 32352849
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggt 55  Q
    ||||||||||| |||||||| ||||||| |||||| |||||||||||    
T  32352803 tggtgttggcggatgttggtggatagaggtggtttgtggtatagggt 32352849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 152
Target Start/End: Original strand, 25504562 - 25504630
Alignment:
Q  84 gggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatggg 152  Q
    |||||||||||||| ||||||| ||||  ||| |||||||||  ||| || | ||||||||||||||||    
T  25504562 gggaggttggaggttgggggccagagttgttcttcttggtggcgggaggttgggaagattagggatggg 25504630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 250
Target Start/End: Complemental strand, 45795644 - 45795612
Alignment:
Q  218 tacttacttttggtatgacaggtggcttggtga 250  Q
    ||||||||||||||||||||||||||| |||||    
T  45795644 tacttacttttggtatgacaggtggctaggtga 45795612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 14843630 - 14843871
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  14843630 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggagacagggaggttggaggtagggggacgga 14843729  T
Q  109 gtacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14843730 gtacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaa 14843829  T
Q  209 tggcgtgtctacttacttttggtatgacaggtggcttggtga 250  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  14843830 tggcgtgtctacttacttttggtatgacaggtggcttggtga 14843871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 9 - 151
Target Start/End: Complemental strand, 19350591 - 19350449
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 108  Q
    |||||||||||  ||||| ||||||||| ||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  19350591 tggtgttggcggttgttgatagatagaggtgggttttggtatagggtgttggtggcgagatatggtgaggaggcagggaggttggaggttgggggccgga 19350492  T
Q  109 gtacttcatcttggtggaaggaagtagtgaagattagggatgg 151  Q
    ||   ||||||||||||||||| |||| |||||||||||||||    
T  19350491 gtgtatcatcttggtggaaggaggtagcgaagattagggatgg 19350449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 9 - 154
Target Start/End: Complemental strand, 32186330 - 32186185
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 108  Q
    ||||||||||   ||||||| ||||||| ||| ||||||||||||||| |||| ||||||||| |||||| ||| |||||||||||||| ||||||||||    
T  32186330 tggtgttggcagttgttggtggatagaggtgggttttggtatagggtgttggtggcgagatatagtgaggtggctgggaggttggaggttgggggccgga 32186231  T
Q  109 gtacttcatcttggtggaaggaagtagtgaagattagggatgggat 154  Q
    || |||| |||||||||| ||| |||||||||||||||||||||||    
T  32186230 gtgcttcttcttggtggagggaggtagtgaagattagggatgggat 32186185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 151
Target Start/End: Original strand, 29976505 - 29976650
Alignment:
Q  13 gttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttgga-------ggtagggggcc 105  Q
    |||||||  ||||| ||||||||| ||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||       ||| |||||||    
T  29976505 gttggcggttgttgatagatagaggtgggttttggtatagggtgttggtggcgagatatggtgaggaggcagggaggttggaggttgggggttgggggcc 29976604  T
Q  106 ggagtacttcatcttggtggaaggaagtagtgaagattagggatgg 151  Q
    |||||   ||||||||||||||||| |||| |||||||||||||||    
T  29976605 ggagtgtatcatcttggtggaaggaggtagcgaagattagggatgg 29976650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 9 - 151
Target Start/End: Original strand, 14686501 - 14686643
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 108  Q
    ||||||||||| |||||||| |||||||  || |||||||||||||| ||||||||| | ||||| |||  ||  ||| |||||||||||||||||||||    
T  14686501 tggtgttggcggatgttggtggatagaggcggattttggtatagggtcctggtagcgcggtatggggagacggttgggcggttggaggtagggggccgga 14686600  T
Q  109 gtacttcatcttggtggaaggaagtagtgaagattagggatgg 151  Q
    ||  ||||||||||||||  ||||||| |||||||||||||||    
T  14686601 gtgtttcatcttggtggagagaagtagcgaagattagggatgg 14686643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 21 - 202
Target Start/End: Complemental strand, 25350857 - 25350676
Alignment:
Q  21 atgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatctt 120  Q
    |||||||| ||||||||||| || |||||||||||| |||| ||| | |||||||||||||| |||||||||| ||||||||||||||||  ||| | ||    
T  25350857 atgttggtggatagagatgggttctggtatagggtgttggtggcgcggtatggtgaggaggctgggaggttggtggtagggggccggagtgattcttttt 25350758  T
Q  121 ggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggt 202  Q
    ||| || |||  ||| ||||||||||||||| || || |||   || ||| |||||||||| ||| |||| |||| ||||||    
T  25350757 ggttgagggagatagcgaagattagggatggaataggagacacggatgggggttggtttgcagagagggtgtcgaaaagggt 25350676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 154
Target Start/End: Complemental strand, 26514370 - 26514226
Alignment:
Q  10 ggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggag 109  Q
    |||||||| | ||| |||| |||||||| || || |||||||| ||| |||| ||  | |||||||||||||||||||| |||||||| |||||||||||    
T  26514370 ggtgttggaggatgctggtggatagagaggggttctggtatagagtgttggtggctcggtatggtgaggaggcagggagtttggaggttgggggccggag 26514271  T
Q  110 tacttcatcttggtggaaggaagtagtgaagattagggatgggat 154  Q
    |  |||   |||||||| |||  ||| ||||||||||||||||||    
T  26514270 tggttctatttggtggagggagatagcgaagattagggatgggat 26514226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 125
Target Start/End: Complemental strand, 10362749 - 10362664
Alignment:
Q  40 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtgg 125  Q
    |||| |||||||||||  |||| |||||||||||||||||||  |||||||||||||| ||||||||||||  ||| |||||||||    
T  10362749 gtttatggtatagggttttggtggcgagatatggtgaggaggatgggaggttggaggtggggggccggagtggttcttcttggtgg 10362664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 151
Target Start/End: Complemental strand, 13086186 - 13086044
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 108  Q
    ||||||||| | ||||||||||||||||  ||||| |||||||| || || || ||  | ||||| ||||  | ||||||||||||||| ||||||||||    
T  13086186 tggtgttggaggatgttggtagatagagtaggtttgtggtatagtgttctagtcgcccgttatggcgaggttggagggaggttggaggttgggggccgga 13086087  T
Q  109 gtacttcatcttggtggaaggaagtagtgaagattagggatgg 151  Q
    ||  ||| | |||||||||||| |||| || |||||| |||||    
T  13086086 gttgttctttttggtggaaggaggtagggaggattagagatgg 13086044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 145
Target Start/End: Original strand, 7956167 - 7956299
Alignment:
Q  12 tgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagta 111  Q
    |||||||| ||||| || |||||||||||| |||||||| | ||| |||| || ||||||||||||||||  ||||||||||||| | | |||||||||     
T  7956167 tgttggcgtatgttagttgatagagatggtctttggtatcgagtgttggtggctagatatggtgaggaggacgggaggttggagg-atgaggccggagtg 7956265  T
Q  112 cttcatcttggtggaaggaagtagtgaagattag 145  Q
     ||| |  ||||||||| | || |||||||||||    
T  7956266 gttctttatggtggaagaaggttgtgaagattag 7956299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 93
Target Start/End: Original strand, 10919957 - 10920041
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttgg 93  Q
    ||||||||| | |||||||| |||||||  || ||||||||||||||| |||| || || |||||||||||||| ||||||||||    
T  10919957 tggtgttggaggatgttggttgatagaggggggttttggtatagggtgttggttgctaggtatggtgaggaggcggggaggttgg 10920041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 130
Target Start/End: Complemental strand, 29056130 - 29056045
Alignment:
Q  45 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaagga 130  Q
    |||||||||||| |||||||  | |||||||||||||  |||||||||| ||| ||||||||||||  ||| || |||||||||||    
T  29056130 tggtatagggtgttggtagcacgttatggtgaggaggatgggaggttggcggttgggggccggagtgtttcttcgtggtggaagga 29056045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 111
Target Start/End: Original strand, 1104440 - 1104542
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 108  Q
    ||||||||| |  |||| ||| |||||  |||||| |||||||||||| |||| ||  | |||||||||||||||| |||||||| ||| ||||||| ||    
T  1104440 tggtgttggagtttgttagtaaatagatgtggtttgtggtatagggtgatggttgctcgttatggtgaggaggcagtgaggttggtggttgggggcctga 1104539  T
Q  109 gta 111  Q
    |||    
T  1104540 gta 1104542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 93
Target Start/End: Complemental strand, 34434907 - 34434823
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttgg 93  Q
    ||||||||||| ||||||||||| ||   | || | |||||||||||  |||| |||||||||||||||||||  ||||||||||    
T  34434907 tggtgttggcggatgttggtagagaggagtagtatatggtatagggttttggtggcgagatatggtgaggaggatgggaggttgg 34434823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 219 - 250
Target Start/End: Original strand, 14686711 - 14686742
Alignment:
Q  219 acttacttttggtatgacaggtggcttggtga 250  Q
    ||||||||||||||||||||||||||||||||    
T  14686711 acttacttttggtatgacaggtggcttggtga 14686742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 96
Target Start/End: Complemental strand, 18588996 - 18588909
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggagg 96  Q
    |||||||||||  |||| || |||||||| || || |||||| | ||| |||| || ||||||||||||||||  |||||||||||||    
T  18588996 tggtgttggcgtttgttagttgatagagacgggttatggtatcgagtgttggtggctagatatggtgaggaggacgggaggttggagg 18588909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 93
Target Start/End: Original strand, 900385 - 900438
Alignment:
Q  40 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttgg 93  Q
    ||||||||||||||||| |||  || || || ||||||||||||||||||||||    
T  900385 gtttttggtatagggtgttggctgctaggtacggtgaggaggcagggaggttgg 900438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 11060430 - 11060494
Alignment:
Q  84 gggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattaggga 148  Q
    |||||||||||||| ||||||||||||  ||| |||||||||| ||| |||| |  |||||||||    
T  11060430 gggaggttggaggttgggggccggagttgttcttcttggtggagggaggtagggcggattaggga 11060494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 154
Target Start/End: Complemental strand, 13938285 - 13938221
Alignment:
Q  90 ttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatgggat 154  Q
    |||||||  ||||||||||||  ||||||||||||| ||||  |||||| |||||| ||||||||    
T  13938285 ttggaggatgggggccggagttgttcatcttggtggcaggagatagtgaggattagagatgggat 13938221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 152
Target Start/End: Original strand, 17078758 - 17078826
Alignment:
Q  84 gggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatggg 152  Q
    |||||||||||||| ||||||||||||  ||| |||||||||| ||| |||| |  |||||| ||||||    
T  17078758 gggaggttggaggttgggggccggagttgttcttcttggtggagggaggtagggcggattagagatggg 17078826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 152
Target Start/End: Original strand, 18051017 - 18051085
Alignment:
Q  84 gggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatggg 152  Q
    |||||||||||||| ||||||||||||  ||| |||||||||| ||| |||| |  |||||| ||||||    
T  18051017 gggaggttggaggttgggggccggagttgttcttcttggtggagggaggtagggcggattagagatggg 18051085  T

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Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 476860 - 476619
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  476860 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 476761  T
Q  109 gtacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaa 208  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  476760 gtacttcatcttggtggaaggaagtagtgaagattagggacgggatgggtgacgctgaggggagttggtttgcggagcgggtttcgagaagggtaggtaa 476661  T
Q  209 tggcgtgtctacttacttttggtatgacaggtggcttggtga 250  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  476660 tggcgtgtctacttacttttggtatgacaggtggcttggtga 476619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 9 - 195
Target Start/End: Complemental strand, 380548 - 380362
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 108  Q
    ||||||||||| |||||||| |||||||||||||| |||||||||||||||| |||| | ||||||||||||||||||||||||||||| ||||||||||    
T  380548 tggtgttggcggatgttggtggatagagatggtttctggtatagggtgctggaagcgcggtatggtgaggaggcagggaggttggaggttgggggccgga 380449  T
Q  109 gtacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcga 195  Q
    ||  ||| ||||||| ||||||| |||||||||||||||| ||| | || || | ||||||| | |||||||||||| |||| ||||    
T  380448 gtggttcttcttggtagaaggaaatagtgaagattagggacgggttaggagaaggtgaggggggctggtttgcggagagggtgtcga 380362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 9 - 152
Target Start/End: Complemental strand, 42259927 - 42259784
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 108  Q
    |||||||| || |||||||| ||||||| ||| |||||||||| |||| | || | ||||||| |||||| ||| ||||| |||||||| ||| ||||||    
T  42259927 tggtgttgacggatgttggtggatagaggtgggttttggtataaggtgtttgtggagagatatcgtgaggtggctgggagtttggaggttgggagccgga 42259828  T
Q  109 gtacttcatcttggtggaaggaagtagtgaagattagggatggg 152  Q
    || |||| |||||||||| ||| |||||||||||||||||||||    
T  42259827 gtgcttcttcttggtggagggaggtagtgaagattagggatggg 42259784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 66 - 152
Target Start/End: Original strand, 22176376 - 22176462
Alignment:
Q  66 agatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatggg 152  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||   || ||||||||||||||| ||| ||||||||||||||||    
T  22176376 agatatggtgaggaggcagggaggttggcggttgggggccggagtgtctcttcttggtggaaggaaatagcgaagattagggatggg 22176462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 32 - 152
Target Start/End: Original strand, 42039221 - 42039341
Alignment:
Q  32 tagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaa 131  Q
    ||||| ||| ||||||||||||||| |||| |||| ||||||||||| ||  ||| |||||||||  |||||||||||| |||  |||||||||| |||     
T  42039221 tagaggtgggttttggtatagggtgttggtggcgaaatatggtgaggtggttgggcggttggaggatgggggccggagtgctttttcttggtggagggag 42039320  T
Q  132 gtagtgaagattagggatggg 152  Q
     || |||||||||||||||||    
T  42039321 ttaatgaagattagggatggg 42039341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 109
Target Start/End: Complemental strand, 41590707 - 41590643
Alignment:
Q  45 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggag 109  Q
    |||||||||||| |||| ||||| |||||||||||||  |||||||||| ||| |||||||||||    
T  41590707 tggtatagggtgttggtggcgaggtatggtgaggaggatgggaggttggcggttgggggccggag 41590643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 29572398 - 29572465
Alignment:
Q  42 ttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggag 109  Q
    |||||||| |||||| |||  || || |||||||||||||||| |||||||||||| |||||||||||    
T  29572398 ttttggtaaagggtgttggctgctaggtatggtgaggaggcagagaggttggaggttgggggccggag 29572465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 29573775 - 29573842
Alignment:
Q  42 ttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggag 109  Q
    |||||||| |||||| |||  || || |||||||||||||||| |||||||||||| |||||||||||    
T  29573775 ttttggtaaagggtgttggctgctaggtatggtgaggaggcagagaggttggaggttgggggccggag 29573842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 29575152 - 29575219
Alignment:
Q  42 ttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggag 109  Q
    |||||||| |||||| |||  || || |||||||||||||||| |||||||||||| |||||||||||    
T  29575152 ttttggtaaagggtgttggctgctaggtatggtgaggaggcagagaggttggaggttgggggccggag 29575219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 29576529 - 29576596
Alignment:
Q  42 ttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggag 109  Q
    |||||||| |||||| |||  || || |||||||||||||||| |||||||||||| |||||||||||    
T  29576529 ttttggtaaagggtgttggctgctaggtatggtgaggaggcagagaggttggaggttgggggccggag 29576596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 29577906 - 29577973
Alignment:
Q  42 ttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggag 109  Q
    |||||||| |||||| |||  || || |||||||||||||||| |||||||||||| |||||||||||    
T  29577906 ttttggtaaagggtgttggctgctaggtatggtgaggaggcagagaggttggaggttgggggccggag 29577973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 29579283 - 29579350
Alignment:
Q  42 ttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggag 109  Q
    |||||||| |||||| |||  || || |||||||||||||||| |||||||||||| |||||||||||    
T  29579283 ttttggtaaagggtgttggctgctaggtatggtgaggaggcagagaggttggaggttgggggccggag 29579350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 109
Target Start/End: Original strand, 4297833 - 4297902
Alignment:
Q  40 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggag 109  Q
    |||| |||||||||||| |||| ||||| |||||||||||||  |||||||||| ||| |||| ||||||    
T  4297833 gtttatggtatagggtgttggtggcgaggtatggtgaggaggatgggaggttggcggttggggcccggag 4297902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 103
Target Start/End: Original strand, 15862194 - 15862264
Alignment:
Q  33 agagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtaggggg 103  Q
    |||||||| ||||||||||||||| || | || || |||||||| ||||| ||| |||||||||| |||||    
T  15862194 agagatgggttttggtatagggtgttgattgctaggtatggtgaagaggctgggcggttggaggttggggg 15862264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 22437851 - 22437810
Alignment:
Q  21 atgttggtagatagagatggtttttggtatagggtgctggta 62  Q
    ||||| ||||||||||||||||| |||||||||||| |||||    
T  22437851 atgttagtagatagagatggtttgtggtatagggtgttggta 22437810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 152
Target Start/End: Original strand, 19513033 - 19513101
Alignment:
Q  84 gggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatggg 152  Q
    |||||||||||||| ||||||||||||  ||| |||||||||| ||| |||| || |||| | ||||||    
T  19513033 gggaggttggaggtggggggccggagttgttcttcttggtggagggaggtagggaggattcgagatggg 19513101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 154
Target Start/End: Complemental strand, 33170224 - 33170160
Alignment:
Q  90 ttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatgggat 154  Q
    |||||||  ||||||||||||  |||||||||||||  |||  |||||| |||||||||||||||    
T  33170224 ttggaggatgggggccggagttgttcatcttggtggcgggagatagtgaggattagggatgggat 33170160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 34103 - 34343
Alignment:
Q  10 ggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggag 109  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  34103 ggtgttggcgaatgttggtagagagagatggtttttggtatagggtgctggtagcgagatatggtgaggagacagggaggttggaggtagggggccggag 34202  T
Q  110 tacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaat 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  34203 tacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagaataggtaat 34302  T
Q  210 ggcgtgtctacttacttttggtatgacaggtggcttggtga 250  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  34303 ggcgtgtctacttacttttggtatgacaggtggcttggtga 34343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 31675578 - 31675337
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 108  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  31675578 tggtgttggcgaatgttggtggatagaggtggtttttggtatagggtgctggtggtgagatatggtgaggaggcagggaggttggaggtagggggccgga 31675479  T
Q  109 gtacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaa 208  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||| ||||||||||||||| | |||||||||    
T  31675478 gtacttcatcttggtggaaggaagtagtgaagattagggacgggatgggtgtagatgaggggagttggtttgaggagcgggtttcgaggaaggtaggtaa 31675379  T
Q  209 tggcgtgtctacttacttttggtatgacaggtggcttggtga 250  Q
    ||||| ||||||||||||||||||||| ||||||||||||||    
T  31675378 tggcgcgtctacttacttttggtatgataggtggcttggtga 31675337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 31920844 - 31921085
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 108  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  31920844 tggtgttggcgaatgttggtggatagaggtggtttttggtatagggtgctggtggtgagatatggtgaggaggcagggaggttggaggtagggggccgga 31920943  T
Q  109 gtacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaa 208  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||||||  ||||||||||||||||||| |||| |||||||||| | |||||||||    
T  31920944 gtacttcatcttggtagaaggaagtagtgaagattagggacgggatgggtgtagatgaggggagttggtttgaggagtgggtttcgaggaaggtaggtaa 31921043  T
Q  209 tggcgtgtctacttacttttggtatgacaggtggcttggtga 250  Q
    ||||| ||||||||||||||||||||| ||||||||||||||    
T  31921044 tggcgcgtctacttacttttggtatgataggtggcttggtga 31921085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 9 - 151
Target Start/End: Complemental strand, 19875890 - 19875748
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 108  Q
    |||||||||||  ||||| ||||||||| ||| ||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||| ||||||||||    
T  19875890 tggtgttggcggttgttgatagatagaggtgggttttggtatagggtgttggtggcgagatatggtgaggaggcaaggaggttggaggttgggggccgga 19875791  T
Q  109 gtacttcatcttggtggaaggaagtagtgaagattagggatgg 151  Q
    ||   ||||||||||||||||| |||| |||||||| ||||||    
T  19875790 gtgtatcatcttggtggaaggaggtagcgaagattaaggatgg 19875748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 9 - 110
Target Start/End: Original strand, 25024337 - 25024438
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 108  Q
    ||||||||| | ||||| || ||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||| ||| ||||| ||||    
T  25024337 tggtgttggaggatgttagtggatagagatggtttttggtatagggtgttggaagctagatatggtgaggaggcagggaggttggcggttgggggtcgga 25024436  T
Q  109 gt 110  Q
    ||    
T  25024437 gt 25024438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 151
Target Start/End: Complemental strand, 53941950 - 53941808
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 108  Q
    ||||||||| | |||||||| |||||||| || || ||||||| |||| |||| ||| | |||||||||||||| |||||||||| ||||||||||||||    
T  53941950 tggtgttggaggatgttggtggatagagaggggttctggtataaggtgttggtggcgcggtatggtgaggaggctgggaggttggtggtagggggccgga 53941851  T
Q  109 gtacttcatcttggtggaaggaagtagtgaagattagggatgg 151  Q
    ||  ||| | || ||||| |||  ||| |||||||||||||||    
T  53941850 gtgattctttttagtggagggagatagcgaagattagggatgg 53941808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 151
Target Start/End: Complemental strand, 55367257 - 55367115
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 108  Q
    ||||||||| | ||||| || ||||||| ||| || ||||||| |||  || |||||||||||||||||||||||| |||||||||||||||||||||||    
T  55367257 tggtgttggaggatgttagttgatagaggtgggttgtggtataaggttttgttagcgagatatggtgaggaggcagagaggttggaggtagggggccgga 55367158  T
Q  109 gtacttcatcttggtggaaggaagtagtgaagattagggatgg 151  Q
    ||  ||| | |||||||| |||  ||  ||||||||| |||||    
T  55367157 gtgattccttttggtggatggagataacgaagattagagatgg 55367115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 152
Target Start/End: Original strand, 40513217 - 40513360
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 108  Q
    ||||||||||| |||||||| ||||||| |||||| ||||||||||| ||||||||  | |||||||||  ||| ||| |||||||||| |||||| |||    
T  40513217 tggtgttggcggatgttggtggatagaggtggtttatggtatagggtcctggtagctcggtatggtgagacggctgggcggttggaggttgggggcagga 40513316  T
Q  109 gtacttcatcttggtggaaggaagtagtgaagattagggatggg 152  Q
    ||  |||| | ||||||  |||| |||  |||||||||||||||    
T  40513317 gtgtttcaccgtggtggcgggaattagcaaagattagggatggg 40513360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 125
Target Start/End: Original strand, 52250648 - 52250733
Alignment:
Q  40 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtgg 125  Q
    |||| |||||||||||| |||| |||||||||||||||||||  |||||||||||||| ||||||||||||  ||| |||||||||    
T  52250648 gtttatggtatagggtgttggtggcgagatatggtgaggaggatgggaggttggaggttgggggccggagtggttcttcttggtgg 52250733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 151
Target Start/End: Complemental strand, 14307855 - 14307713
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 108  Q
    ||||||||| ||||||| || |||||||  || || |||| ||| ||  |||  |||||||||||||||||||||||||| |||||| | ||||||||||    
T  14307855 tggtgttggagaatgttcgtggatagagcggggttctggtgtagagtattggcggcgagatatggtgaggaggcagggagattggagtttgggggccgga 14307756  T
Q  109 gtacttcatcttggtggaaggaagtagtgaagattagggatgg 151  Q
    ||   ||| ||||||||| |||  ||| |||||||||||||||    
T  14307755 gtgtgtcaccttggtggagggagatagcgaagattagggatgg 14307713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 110
Target Start/End: Complemental strand, 48930373 - 48930272
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 108  Q
    |||||||||||  |||||||||| ||  || |||| |||||||||||  |||| |||||||||||||||||||  |||||||||||||| |||||| |||    
T  48930373 tggtgttggcggctgttggtagagaggaatagtttatggtatagggttttggtggcgagatatggtgaggaggatgggaggttggaggttgggggctgga 48930274  T
Q  109 gt 110  Q
    ||    
T  48930273 gt 48930272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 152
Target Start/End: Complemental strand, 34830040 - 34829904
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 108  Q
    ||||||||||| |||||||| |||| || ||| || ||||||||||| |||| |||| ||||||||||| |       || | |||||| |||| |||||    
T  34830040 tggtgttggcggatgttggtggatatagttgggttatggtatagggtactggcagcgcgatatggtgagaa-------agatgggaggttggggcccgga 34829948  T
Q  109 gtacttcatcttggtggaaggaagtagtgaagattagggatggg 152  Q
    ||  |||||||||||||   ||||||| ||||||||||||||||    
T  34829947 gtgtttcatcttggtggtgtgaagtagcgaagattagggatggg 34829904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 148
Target Start/End: Complemental strand, 46190136 - 46190000
Alignment:
Q  12 tgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagta 111  Q
    ||||||||  ||||||| |||| ||  ||||| ||||| |||||  |||| ||||| |||||||||||||| | | |||||||||| ||||||||||||     
T  46190136 tgttggcggttgttggtggataaaggaggtttgtggtacagggtattggtggcgaggtatggtgaggaggctgagcggttggaggttgggggccggagtg 46190037  T
Q  112 cttcatcttggtggaaggaagtagtgaagattaggga 148  Q
     |||   ||| |||| ||| |||| ||||||||||||    
T  46190036 tttctaattgatggagggaggtagcgaagattaggga 46190000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 104
Target Start/End: Complemental strand, 18381705 - 18381610
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggc 104  Q
    ||||||||| |||||||||| |||||||  || || |||||| ||||  |||| |||||||||||||| ||||  || |||||||| |||||||||    
T  18381705 tggtgttggagaatgttggttgatagaggagggttatggtattgggttttggtggcgagatatggtgacgaggatggaaggttggatgtagggggc 18381610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 109
Target Start/End: Complemental strand, 6825438 - 6825369
Alignment:
Q  40 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggag 109  Q
    |||| |||||||||||| |||| ||| | |||||||||||||  |||||||||| ||| |||||||||||    
T  6825438 gtttatggtatagggtgttggtggcgcggtatggtgaggaggatgggaggttggcggttgggggccggag 6825369  T

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Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 148
Target Start/End: Complemental strand, 35537353 - 35537276
Alignment:
Q  71 tggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattaggga 148  Q
    ||||||||||||| |||| |||||||| ||||||||||||  ||| | |||||||| ||| || |||| |||||||||    
T  35537353 tggtgaggaggcaaggagattggaggttgggggccggagtgattcttattggtggagggaggtggtgaggattaggga 35537276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 152
Target Start/End: Original strand, 14863958 - 14864101
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 108  Q
    ||||||||| | |||||||| |||| ||  ||||| |||||||| || || || ||  | ||||| |||| ||  |||||||||||||| ||||||||||    
T  14863958 tggtgttggaggatgttggtcgataaagtaggtttatggtatagtgttcttgtcgcctgttatggcgaggtgggtgggaggttggaggtggggggccgga 14864057  T
Q  109 gtacttcatcttggtggaaggaagtagtgaagattagggatggg 152  Q
    ||  ||| |||||||||| ||| |||| || |||| | ||||||    
T  14864058 gttgttcttcttggtggagggaggtagggaggattcgagatggg 14864101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 31547980 - 31547897
Alignment:
Q  48 tatagggtgctggtagcgagatatggtgaggaggcagggaggttggagg-tagggggccggagtacttcatcttggtggaagga 130  Q
    ||||||||| |||||||| | |||||||||||||  |||||||||| || | ||||||||||||  ||| || |||||||||||    
T  31547980 tatagggtgttggtagcgcgttatggtgaggaggatgggaggttggtggttggggggccggagtgtttcttcgtggtggaagga 31547897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 42807316 - 42807259
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcga 66  Q
    ||||||||||| |||||||||||||| ||| |||| |||| ||||||| |||| ||||    
T  42807316 tggtgttggcggatgttggtagatagggatagtttatggtttagggtgttggtggcga 42807259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 130
Target Start/End: Complemental strand, 44888515 - 44888430
Alignment:
Q  45 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaagga 130  Q
    |||||||||||| |||| ||| | |||||||||||||  |||||||||| ||| | ||| ||||||  ||| || |||||||||||    
T  44888515 tggtatagggtgttggtggcgcgttatggtgaggaggatgggaggttggtggttgagggtcggagtgtttcttcgtggtggaagga 44888430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 154
Target Start/End: Original strand, 962737 - 962801
Alignment:
Q  90 ttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatgggat 154  Q
    |||||||  ||||| ||||||  |||||||||||||| |||  |||||| |||||||||||||||    
T  962737 ttggaggatgggggtcggagttgttcatcttggtggagggagatagtgaggattagggatgggat 962801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 250
Target Start/End: Complemental strand, 34829857 - 34829825
Alignment:
Q  218 tacttacttttggtatgacaggtggcttggtga 250  Q
    ||||| |||||||||||||||||||||||||||    
T  34829857 tactttcttttggtatgacaggtggcttggtga 34829825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 8e-42; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 9 - 151
Target Start/End: Original strand, 27218615 - 27218757
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 108  Q
    |||||||||||  ||||| ||||||||| ||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||| ||||||||||    
T  27218615 tggtgttggcggttgttgatagatagaggtggattttggtatagggtgttggtggcgagatatggtgaggaggcagggaggttggcggttgggggccgga 27218714  T
Q  109 gtacttcatcttggtggaaggaagtagtgaagattagggatgg 151  Q
    ||   ||||||||||||||||| |||| |||||||||||||||    
T  27218715 gtgtatcatcttggtggaaggaggtagcgaagattagggatgg 27218757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 148
Target Start/End: Original strand, 19544895 - 19545034
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 108  Q
    ||||||||||| |||||||| ||||||||||| ||||||||||||||| |||   |  |||||||||||||||||| |||||||||||| ||||||||||    
T  19544895 tggtgttggcggatgttggtggatagagatgggttttggtatagggtgttggcgacacgatatggtgaggaggcagagaggttggaggttgggggccgga 19544994  T
Q  109 gtacttcatcttggtggaaggaagtagtgaagattaggga 148  Q
    ||  ||| |  |||||||||||  ||||||||||||||||    
T  19544995 gtggttctttgtggtggaaggatctagtgaagattaggga 19545034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 152
Target Start/End: Original strand, 17504052 - 17504195
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 108  Q
    ||||||||||  ||||| || |||||||||||| |||||||| | ||| |||| |||||||| ||||||||||  |||||||||||||  ||||||||||    
T  17504052 tggtgttggcatatgttagttgatagagatggtctttggtatcgagtgttggtggcgagatacggtgaggaggatgggaggttggaggatgggggccgga 17504151  T
Q  109 gtacttcatcttggtggaaggaagtagtgaagattagggatggg 152  Q
    ||  ||| |  ||||||||||| ||  |||||||||| ||||||    
T  17504152 gtggttctttgtggtggaaggaggttatgaagattagagatggg 17504195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 152
Target Start/End: Complemental strand, 17549162 - 17549019
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 108  Q
    ||||||||||  ||||| || |||||||||||| |||||||| | ||| |||| |||||||| ||||||||||  |||||||||||||  ||||||||||    
T  17549162 tggtgttggcatatgttagttgatagagatggtctttggtatcgagtgttggtggcgagatacggtgaggaggatgggaggttggaggatgggggccgga 17549063  T
Q  109 gtacttcatcttggtggaaggaagtagtgaagattagggatggg 152  Q
    ||  ||| |  ||||||||||| ||  |||||||||| ||||||    
T  17549062 gtggttctttgtggtggaaggaggttatgaagattagagatggg 17549019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 195
Target Start/End: Complemental strand, 20349598 - 20349425
Alignment:
Q  21 atgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatctt 120  Q
    |||||||||||||||||  | || |||||||||||| |||| ||  | |||||||||||||||||||||||||||||||||| | |||||  |||   ||    
T  20349598 atgttggtagatagagaaaggttatggtatagggtgttggtggctcggtatggtgaggaggcagggaggttggaggtagggg-caggagtggttctcttt 20349500  T
Q  121 ggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcga 195  Q
    |||||| |||  ||| |||||||||||||||||| || ||   ||||| | |||||||||| ||| |||| ||||    
T  20349499 ggtggagggagatagcgaagattagggatgggataggcgattctgaggagggttggtttgcagagagggtgtcga 20349425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 110
Target Start/End: Complemental strand, 11341443 - 11341342
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 108  Q
    ||||||||| | ||||||||  ||||| | || ||||||||||||||| |||  || || ||||||||||||||||||||||||||||| ||||||||||    
T  11341443 tggtgttggaggatgttggtttatagatagggattttggtatagggtgttggctgctaggtatggtgaggaggcagggaggttggaggtcgggggccgga 11341344  T
Q  109 gt 110  Q
    ||    
T  11341343 gt 11341342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 148
Target Start/End: Complemental strand, 34104112 - 34103985
Alignment:
Q  21 atgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatctt 120  Q
    |||||| | |||| ||| || ||||||||||||||| |||| ||| | || |||||||||||| ||||||||||||  |||||| |||||  ||| | ||    
T  34104112 atgttgatggataaagaggggttttggtatagggtgttggtggcgcgttacggtgaggaggcaaggaggttggaggatgggggctggagtggttcttgtt 34104013  T
Q  121 ggtggaaggaagtagtgaagattaggga 148  Q
    ||||||||||  ||||||||||||||||    
T  34104012 ggtggaaggatttagtgaagattaggga 34103985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 8752925 - 8752973
Alignment:
Q  45 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttgg 93  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  8752925 tggtatagggtgctggtggcgagatatggtgaggaggctgggaggttgg 8752973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 125
Target Start/End: Original strand, 25018847 - 25018927
Alignment:
Q  45 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtgg 125  Q
    |||||||||||| |||| || ||||||||||||||||| |||||||||||||| ||||| || |||  ||| |||||||||    
T  25018847 tggtatagggtgttggtggcaagatatggtgaggaggctgggaggttggaggttgggggtcgaagtggttcttcttggtgg 25018927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 152
Target Start/End: Complemental strand, 23887730 - 23887588
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 108  Q
    ||||||||| | ||| ||||||| |||| ||  || |||||||||||  |||  | ||| || |||||||||||||| ||||||||||| ||||| ||||    
T  23887730 tggtgttggaggatgctggtagacagaggtgagttctggtatagggttttggcggtgaggtacggtgaggaggcagg-aggttggaggttgggggtcgga 23887632  T
Q  109 gtacttcatcttggtggaaggaagtagtgaagattagggatggg 152  Q
    ||  ||| |||||||||| |||  ||| ||||||||||||||||    
T  23887631 gtgtttcttcttggtggagggagatagcgaagattagggatggg 23887588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 152
Target Start/End: Complemental strand, 23898906 - 23898764
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 108  Q
    ||||||||| | ||| ||||||| |||| ||  || |||||||||||  |||  | ||| || |||||||||||||| ||||||||||| ||||| ||||    
T  23898906 tggtgttggaggatgctggtagacagaggtgagttctggtatagggttttggcggtgaggtacggtgaggaggcagg-aggttggaggttgggggtcgga 23898808  T
Q  109 gtacttcatcttggtggaaggaagtagtgaagattagggatggg 152  Q
    ||  ||| |||||||||| |||  ||| ||||||||||||||||    
T  23898807 gtgtttcttcttggtggagggagatagcgaagattagggatggg 23898764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 130
Target Start/End: Complemental strand, 17056140 - 17056055
Alignment:
Q  45 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaagga 130  Q
    |||||||||||| |||| ||| | |||||||||||||  |||||||||| ||| ||||||||||||  ||| || |||||||||||    
T  17056140 tggtatagggtgttggtggcgcgttatggtgaggaggatgggaggttggtggttgggggccggagtgtttcttcgtggtggaagga 17056055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 135
Target Start/End: Original strand, 22819246 - 22819336
Alignment:
Q  45 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtag 135  Q
    |||||||||||| |||||||| | |||||||||||||   ||||||||| ||| ||||||||||||  ||| |  ||||||||||| ||||    
T  22819246 tggtatagggtgttggtagcgcgttatggtgaggaggacaggaggttggcggttgggggccggagtgtttctttgtggtggaaggaggtag 22819336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 41805282 - 41805323
Alignment:
Q  40 gtttttggtatagggtgctggtagcgagatatggtgaggagg 81  Q
    ||||||||||||||||| |||| |||||||||||||||||||    
T  41805282 gtttttggtatagggtgttggtggcgagatatggtgaggagg 41805323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 23054476 - 23054548
Alignment:
Q  21 atgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttgg 93  Q
    ||||| || |||||||  || ||||||||||||||| |||  || ||| ||||||||||||||||||||||||    
T  23054476 atgttagttgatagaggagggttttggtatagggtgttggcggctagacatggtgaggaggcagggaggttgg 23054548  T

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Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 92
Target Start/End: Complemental strand, 20918594 - 20918524
Alignment:
Q  22 tgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttg 92  Q
    |||| ||||||||||  ||||| |||||||||||||| ||| |  | ||||||||| ||||||||||||||    
T  20918594 tgttagtagatagaggaggtttgtggtatagggtgctagtaactcgttatggtgagaaggcagggaggttg 20918524  T

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Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 110
Target Start/End: Original strand, 13553677 - 13553778
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 108  Q
    ||||||||| | ||||||||||||||||  || || |||||||| || || || ||  | ||||| ||||  | ||||||||||||||| ||||||||||    
T  13553677 tggtgttggaggatgttggtagatagagtagggttgtggtatagtgttctagtcgcccgttatggcgaggttggagggaggttggaggttgggggccgga 13553776  T
Q  109 gt 110  Q
    ||    
T  13553777 gt 13553778  T

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Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 39658919 - 39658972
Alignment:
Q  47 gtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagg 100  Q
    |||||||||| |||| ||| | |||||||||||||| |||||||||| ||||||    
T  39658919 gtatagggtgttggtggcgcggtatggtgaggaggctgggaggttgggggtagg 39658972  T

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Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 12308647 - 12308699
Alignment:
Q  41 tttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttgg 93  Q
    |||||||||||||||| |||  || || ||||||||||||||| |||||||||    
T  12308647 tttttggtatagggtgttggctgcaaggtatggtgaggaggcatggaggttgg 12308699  T

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Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 9 - 151
Target Start/End: Complemental strand, 6824058 - 6823916
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 108  Q
    ||||||||| |||||||||| |||||||  || || |||||||||||  |||  |||||||||| |||||||||||||||||||||||| ||||||||||    
T  6824058 tggtgttggagaatgttggtggatagagcggggttctggtatagggttttggcggcgagatatgttgaggaggcagggaggttggaggttgggggccgga 6823959  T
Q  109 gtacttcatcttggtggaaggaagtagtgaagattagggatgg 151  Q
    ||  |||| | ||||||||||| |||| |||||||||||||||    
T  6823958 gtgtttcaccgtggtggaaggaggtagcgaagattagggatgg 6823916  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 9 - 152
Target Start/End: Complemental strand, 11196998 - 11196855
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 108  Q
    ||||||||||||||| |||| |||||||  || || ||||||||||| ||||||||| | |||||||||   |  ||| |||||||||| ||||||||||    
T  11196998 tggtgttggcgaatgatggtggatagaggcgggttatggtatagggttctggtagcgcggtatggtgagacagttgggcggttggaggttgggggccgga 11196899  T
Q  109 gtacttcatcttggtggaaggaagtagtgaagattagggatggg 152  Q
    ||  |||||||||||||  ||||||||  |||||||||||||||    
T  11196898 gtgtttcatcttggtggcgggaagtagctaagattagggatggg 11196855  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 125
Target Start/End: Complemental strand, 43310875 - 43310790
Alignment:
Q  40 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtgg 125  Q
    |||| |||||||||||| |||| ||||||||||| |||||||  |||||||||||||| ||||||||||||  ||| |||||||||    
T  43310875 gtttgtggtatagggtgttggtggcgagatatggcgaggaggatgggaggttggaggttgggggccggagtggttcttcttggtgg 43310790  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 110
Target Start/End: Complemental strand, 26146831 - 26146761
Alignment:
Q  40 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagt 110  Q
    |||| |||||||||||| |||| ||||||||||| |||||||  |||||||||||||| ||||||||||||    
T  26146831 gtttgtggtatagggtgttggtggcgagatatggcgaggaggatgggaggttggaggttgggggccggagt 26146761  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 124
Target Start/End: Complemental strand, 10689170 - 10689087
Alignment:
Q  40 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtg 124  Q
    |||| |||||||||||| |||| | |||||||||||| |||||  |||||||||||||  |||||||||||  ||| ||||||||    
T  10689170 gtttatggtatagggtgttggtggtgagatatggtgatgaggctaggaggttggaggt-tggggccggagtggttcttcttggtg 10689087  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 148
Target Start/End: Complemental strand, 7301307 - 7301181
Alignment:
Q  22 tgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttg 121  Q
    ||||||| ||||||| ||| |||| |||||||||| |||| | ||| || ||| ||||| ||| |||||||||||| ||||| |  |||   || |||||    
T  7301307 tgttggtggatagaggtgggttttagtatagggtgttggtggtgaggtacggtaaggagacagagaggttggaggttgggggacatagtgtctcttcttg 7301208  T
Q  122 gtggaaggaagtagtgaagattaggga 148  Q
    ||||| |||  ||| ||||||||||||    
T  7301207 gtggagggagatagcgaagattaggga 7301181  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 151
Target Start/End: Original strand, 9668501 - 9668641
Alignment:
Q  11 gtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagt 110  Q
    ||||||| | ||||||||||||||||  || || |||||||| || || || ||  | ||||| ||||  | ||||||||||||||| ||||||||||||    
T  9668501 gtgttggaggatgttggtagatagagtagggttgtggtatagtgttctagtcgcccgttatggcgaggttggagggaggttggaggttgggggccggagt 9668600  T
Q  111 acttcatcttggtggaaggaagtagtgaagattagggatgg 151  Q
      ||| | |||||||| ||| || | || |||||| |||||    
T  9668601 tgttcttattggtggagggaggtggggaggattagagatgg 9668641  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 152
Target Start/End: Complemental strand, 15018249 - 15018181
Alignment:
Q  84 gggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatggg 152  Q
    |||||||||||||| |||||||| |||  ||| |||||||||  ||| |||| || |||||||||||||    
T  15018249 gggaggttggaggttgggggccgaagttgttcttcttggtggcgggaggtagggaggattagggatggg 15018181  T

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Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 45 - 250
Target Start/End: Complemental strand, 2072151 - 2071946
Alignment:
Q  45 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagatta 144  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||| ||||| ||||| ||||||  ||| |  ||||||| |||  ||||||||||||    
T  2072151 tggtatagggtgctggtggcgagatatggtgaggaggcaaggaggttagaggttgggggacggagtgtttcttgctggtggagggagttagtgaagatta 2072052  T
Q  145 gggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaatggcgtgtctacttacttttggtatgacaggtggct 244  Q
    |||| ||| | ||||| |  |||||| | |||||||| ||| |||| ||||||| ||||||  ||||  |   |||||||||||||| |||||||||| |    
T  2072051 gggacggggtaggtgaggccgaggggggctggtttgcagagagggtgtcgagaaaggtaggggatggtttacatacttacttttggtctgacaggtgggt 2071952  T
Q  245 tggtga 250  Q
    ||||||    
T  2071951 tggtga 2071946  T

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Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 43516241 - 43516482
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 108  Q
    ||||||||||  |||||||  ||||||| |||||| ||||||||||| || |||| | | |||||||||  ||| ||| |||||||||| |||||| |||    
T  43516241 tggtgttggcagatgttggcggatagaggtggtttatggtatagggtcctagtagtgcggtatggtgagacggctgggcggttggaggttgggggcagga 43516340  T
Q  109 gtacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaa 208  Q
    ||  |||||||||||||  |||||||| |||||||||||||||| | || || |  |||||| | |||||||| ||| |||| |||| ||  |||||  |    
T  43516341 gtgtttcatcttggtggcgggaagtagcgaagattagggatggggtaggcgatgtagaggggggctggtttgcagagagggtgtcgaaaaaagtaggaga 43516440  T
Q  209 tggcgtgtctacttacttttggtatgacaggtggcttggtga 250  Q
    ||||     |||||||||||||||||||| ||||||||||||    
T  43516441 tggctctagtacttacttttggtatgacaagtggcttggtga 43516482  T

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Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 151
Target Start/End: Complemental strand, 9691069 - 9690927
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 108  Q
    ||||||||| |  ||||||| ||||||  ||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| ||||||||||    
T  9691069 tggtgttggaggttgttggtggatagatgtgggttttggtatagggtgctagtagctagatatggtgaggaggctgggaggttggaggttgggggccgga 9690970  T
Q  109 gtacttcatcttggtggaaggaagtagtgaagattagggatgg 151  Q
    ||  |||   |||||||| |||  ||| |||||||||||||||    
T  9690969 gtgtttctcattggtggagggagatagcgaagattagggatgg 9690927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 52617407 - 52617497
Alignment:
Q  58 tggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattaggga 148  Q
    |||| |||||||||||||||||||||| ||||||||||||  | |||||||||  |||||||||||||| |||  ||| ||||||||||||    
T  52617407 tggtggcgagatatggtgaggaggcagagaggttggaggttagaggccggagtgtttcatcttggtggagggagatagcgaagattaggga 52617497  T

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Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 148
Target Start/End: Original strand, 56336993 - 56337132
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 108  Q
    |||||||| ||  ||||||| |||||||  ||||| ||||||||||| || |  ||||| |||||||||||||| ||| |||||||||| ||||| ||||    
T  56336993 tggtgttgtcggttgttggtggatagagtaggtttgtggtatagggtactagcggcgaggtatggtgaggaggctgggcggttggaggttgggggtcgga 56337092  T
Q  109 gtacttcatcttggtggaaggaagtagtgaagattaggga 148  Q
    ||  |||  ||||||||| |||  ||| ||||||||||||    
T  56337093 gtgtttctacttggtggagggagatagcgaagattaggga 56337132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 152
Target Start/End: Complemental strand, 7099104 - 7098986
Alignment:
Q  34 gagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagt 133  Q
    |||| ||||| |||||| ||||  || |||| ||||||||||||||||  | |||||||||||  ||||||||||||  |||   |||||||||||| ||    
T  7099104 gagagggtttgtggtatcgggttttgatagctagatatggtgaggaggatgagaggttggaggatgggggccggagtggttctatttggtggaaggaggt 7099005  T
Q  134 agtgaagattagggatggg 152  Q
     ||||||||||||||||||    
T  7099004 tgtgaagattagggatggg 7098986  T

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Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 148
Target Start/End: Complemental strand, 36183148 - 36183045
Alignment:
Q  45 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagatta 144  Q
    ||||||||||| || || || ||||||||||||||||  ||| |||||||||| ||||||||||||  |||  ||||||||| |||  ||| ||||||||    
T  36183148 tggtatagggtacttgtggcaagatatggtgaggaggatgggcggttggaggttgggggccggagtgtttctacttggtggagggagatagcgaagatta 36183049  T
Q  145 ggga 148  Q
    ||||    
T  36183048 ggga 36183045  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 38296322 - 38296258
Alignment:
Q  40 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggc 104  Q
    ||||||||||||||||| |||| |||||||||||||||| |   |||||||||||||| ||||||    
T  38296322 gtttttggtatagggtgttggtggcgagatatggtgaggtgaatgggaggttggaggttgggggc 38296258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 184
Target Start/End: Original strand, 55725199 - 55725374
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 108  Q
    ||||||||| |  |||| |||||||||||||| || |||||||||||| |||| || || ||||||| |||||  ||  | |||||||  ||||||||||    
T  55725199 tggtgttggaggttgttagtagatagagatggattatggtatagggtgttggtggctaggtatggtgtggaggatggtggtttggaggatgggggccgga 55725298  T
Q  109 gtacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcgga 184  Q
    ||  ||| |||||||||| |||  |||| | ||| || |||||||| || || | || || | |||||||||||||    
T  55725299 gttgttcttcttggtggagggagatagtcatgatcagagatgggataggcgagggtggggagggttggtttgcgga 55725374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 152
Target Start/End: Original strand, 49925835 - 49925903
Alignment:
Q  84 gggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatggg 152  Q
    |||||||||||||| ||||||||||||  ||| |||||||||  ||| || | ||||||||||||||||    
T  49925835 gggaggttggaggttgggggccggagttgttcttcttggtggcgggaggtggggaagattagggatggg 49925903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 3129482 - 3129528
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggt 55  Q
    ||||||||||| |||||||| ||||||| |||||| |||||||||||    
T  3129482 tggtgttggcggatgttggtggatagaggtggtttgtggtatagggt 3129528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 23872969 - 23873015
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggt 55  Q
    ||||||||||| |||||||||||||||| |||||| |||||| ||||    
T  23872969 tggtgttggcggatgttggtagatagaggtggtttgtggtatcgggt 23873015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 2365641 - 2365552
Alignment:
Q  21 atgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagt 110  Q
    ||||| || |||||||  ||||| |||||||||||| |||| ||  | ||||||||||||| |||||||||| |||  ||||| ||||||    
T  2365641 atgttagttgatagaggaggtttatggtatagggtgttggttgctcgttatggtgaggaggtagggaggttgaaggatgggggtcggagt 2365552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 130
Target Start/End: Complemental strand, 9777981 - 9777896
Alignment:
Q  45 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaagga 130  Q
    |||||||||||| |||||||| | ||| |||||||||  |||||||||  ||| ||||||||||||  ||| |  |||||||||||    
T  9777981 tggtatagggtgttggtagcgcgttatagtgaggaggatgggaggttgacggttgggggccggagtgtttctttgtggtggaagga 9777896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 97
Target Start/End: Original strand, 29328301 - 29328358
Alignment:
Q  40 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggt 97  Q
    |||||||||||| |||  |||| ||||| |||||||||||||  ||||||||||||||    
T  29328301 gtttttggtataaggtcttggtcgcgaggtatggtgaggaggtggggaggttggaggt 29328358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 110
Target Start/End: Complemental strand, 41382560 - 41382519
Alignment:
Q  69 tatggtgaggaggcagggaggttggaggtagggggccggagt 110  Q
    |||||||||||||| ||| |||||||||| ||||||||||||    
T  41382560 tatggtgaggaggctgggcggttggaggttgggggccggagt 41382519  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 152
Target Start/End: Complemental strand, 19115008 - 19114940
Alignment:
Q  84 gggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatggg 152  Q
    |||||||||||||| ||||||| ||||  ||| |||||||||  ||| |||| || |||||||||||||    
T  19115008 gggaggttggaggttgggggccagagttgttcttcttggtggcgggaggtagggaggattagggatggg 19114940  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 106
Target Start/End: Original strand, 55464379 - 55464463
Alignment:
Q  22 tgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccg 106  Q
    |||| |||||||||| |||||| ||||||||||| ||||| ||  | || ||||||| |||||| |||||||  || ||||||||    
T  55464379 tgttagtagatagaggtggtttgtggtatagggtactggttgctcggtacggtgaggtggcaggtaggttggcagttgggggccg 55464463  T

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Target: scaffold0189 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 12 - 151
Target Start/End: Complemental strand, 6732 - 6593
Alignment:
Q  12 tgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagta 111  Q
    |||||| | |||||||||||  |||  ||||| |||||||||||  | || ||||||||||||||||||||||||||||||||||| |||||| |||||     
T  6732 tgttggaggatgttggtagagcgaggcggtttgtggtatagggttttagtggcgagatatggtgaggaggcagggaggttggaggttgggggctggagtg 6633  T
Q  112 cttcatcttggtggaaggaagtagtgaagattagggatgg 151  Q
    ||||||| |||||||  || |||| |||||||||||||||    
T  6632 cttcatcatggtggagagaggtagcgaagattagggatgg 6593  T

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Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 21 - 154
Target Start/End: Complemental strand, 25193723 - 25193590
Alignment:
Q  21 atgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatctt 120  Q
    |||||||| ||||||||||| || |||||| ||||| |||| | | | |||||||||||||| |||||||||||||||||||||||||||  ||| | ||    
T  25193723 atgttggtggatagagatgggttctggtatcgggtgttggtggtgcggtatggtgaggaggctgggaggttggaggtagggggccggagtgattcttatt 25193624  T
Q  121 ggtggaaggaagtagtgaagattagggatgggat 154  Q
    |||||| |||  ||| ||||||||||||||||||    
T  25193623 ggtggagggagatagcgaagattagggatgggat 25193590  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 45 - 159
Target Start/End: Original strand, 29721439 - 29721553
Alignment:
Q  45 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagatta 144  Q
    |||||||||||  |||| |||||||||||||||||| | |||||||||||||||||||||||||||   || | |||||||| |||  ||| ||||||||    
T  29721439 tggtatagggttttggtggcgagatatggtgaggagcctgggaggttggaggtagggggccggagtgtctcttattggtggagggagatagcgaagatta 29721538  T
Q  145 gggatgggatgggtg 159  Q
    |||||||||| ||||    
T  29721539 gggatgggattggtg 29721553  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 148
Target Start/End: Complemental strand, 15439764 - 15439632
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 108  Q
    ||||||||||  ||||||||  ||||||||||||| |||||||||||| |||  |||   |||||||||||||||||||||||       ||||||||||    
T  15439764 tggtgttggcagatgttggtgaatagagatggtttatggtatagggtgttgggggcgcagtatggtgaggaggcagggaggtt-------gggggccgga 15439672  T
Q  109 gtacttcatcttggtggaaggaagtagtgaagattaggga 148  Q
    |   ||| | ||||||||||||||||||||||||||||||    
T  15439671 gcggttctttttggtggaaggaagtagtgaagattaggga 15439632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 148
Target Start/End: Complemental strand, 15531068 - 15530936
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 108  Q
    ||||||||||  ||||||||  ||||||||||||| |||||||||||| |||  |||   |||||||||||||||||||||||       ||||||||||    
T  15531068 tggtgttggcagatgttggtgaatagagatggtttatggtatagggtgttgggggcgcagtatggtgaggaggcagggaggtt-------gggggccgga 15530976  T
Q  109 gtacttcatcttggtggaaggaagtagtgaagattaggga 148  Q
    |   ||| | ||||||||||||||||||||||||||||||    
T  15530975 gcggttctttttggtggaaggaagtagtgaagattaggga 15530936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 152
Target Start/End: Complemental strand, 6245727 - 6245593
Alignment:
Q  11 gtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagt 110  Q
    ||||||||| |||||||| ||||||| |||  | ||||||||||| || |||||  | ||||||||| |||| ||||||||||       ||||||||||    
T  6245727 gtgttggcggatgttggtggatagaggtgggctctggtatagggttcttgtagcatgttatggtgagaaggctgggaggttgg-------gggccggagt 6245635  T
Q  111 acttcatcttggtggaaggaagtagtgaagattagggatggg 152  Q
      |||||||||||||  |||||||||||||||||||||||||    
T  6245634 gtttcatcttggtggcgggaagtagtgaagattagggatggg 6245593  T

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Target: chr8; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 151
Target Start/End: Complemental strand, 36025168 - 36025026
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 108  Q
    ||||||||||| |||||||| |||||||  || || |||||||| ||  |||| |||||||||||||||||||| ||| |||||||||| |||| |||||    
T  36025168 tggtgttggcggatgttggtggatagaggagggttatggtatagagttttggtggcgagatatggtgaggaggctgggcggttggaggttggggaccgga 36025069  T
Q  109 gtacttcatcttggtggaaggaagtagtgaagattagggatgg 151  Q
    ||  |||  ||| |||||  ||  ||| |||||||||||||||    
T  36025068 gtgtttccactttgtggagagagttagcgaagattagggatgg 36025026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 148
Target Start/End: Original strand, 37165617 - 37165753
Alignment:
Q  12 tgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagta 111  Q
    |||||| | ||||| || |||||||  || || ||||||||||| ||||| ||||||||||| |||||||  ||| |||||||||| ||||||||||||     
T  37165617 tgttggaggatgttagtggatagaggaggcttgtggtatagggtactggtggcgagatatggcgaggaggatgggcggttggaggttgggggccggagtg 37165716  T
Q  112 cttcatcttggtggaaggaagtagtgaagattaggga 148  Q
     |||  ||||||||| |||  ||| ||||||||||||    
T  37165717 tttctacttggtggagggagatagcgaagattaggga 37165753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 151
Target Start/End: Complemental strand, 12341214 - 12341072
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 108  Q
    ||||||||| | ||||| || |||||||  || || |||| |||||| ||||| ||||| |||||||||||||| ||| |||||||||| ||| ||||||    
T  12341214 tggtgttggaggatgttagtggatagaggagggttgtggtttagggtactggtggcgaggtatggtgaggaggctgggcggttggaggttgggagccgga 12341115  T
Q  109 gtacttcatcttggtggaaggaagtagtgaagattagggatgg 151  Q
    ||  |||   |||||||| | |  ||| |||||||||||||||    
T  12341114 gtgtttctaattggtggaggtagatagcgaagattagggatgg 12341072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 18187793 - 18187672
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 108  Q
    ||||||||| || |||| |||||||||| |||||| |||||||||| |||||| |   ||||||||||||||| |||| ||||||  || | ||||||||    
T  18187793 tggtgttggagattgttagtagatagaggtggtttgtggtatagggagctggttgattgatatggtgaggaggtagggcggttggcagttgagggccgga 18187694  T
Q  109 gtacttcatcttggtggaagga 130  Q
    ||  ||| |  |||||||||||    
T  18187693 gtggttctttgtggtggaagga 18187672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 109
Target Start/End: Complemental strand, 36492997 - 36492928
Alignment:
Q  40 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggag 109  Q
    |||| |||||||||||| |||| ||||| |||||||||||||  |||||||||| ||| |||||||||||    
T  36492997 gtttatggtatagggtgttggtggcgaggtatggtgaggaggatgggaggttggcggttgggggccggag 36492928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 93
Target Start/End: Complemental strand, 12332461 - 12332411
Alignment:
Q  43 tttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttgg 93  Q
    |||||||||||||| |||| |||||||||||||||||||  ||||||||||    
T  12332461 tttggtatagggtgttggtggcgagatatggtgaggaggatgggaggttgg 12332411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 152
Target Start/End: Complemental strand, 6901481 - 6901413
Alignment:
Q  84 gggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatggg 152  Q
    |||||||||||||| |||||||| |||  ||| ||||||||| ||||||||| || |||| | ||||||    
T  6901481 gggaggttggaggttgggggccgaagtggttcttcttggtggcaggaagtagggaggattcgtgatggg 6901413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 17659403 - 17659339
Alignment:
Q  84 gggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattaggga 148  Q
    |||||||||||||| ||||||||||||  ||| |||||||||| ||| |||| |  |||||||||    
T  17659403 gggaggttggaggttgggggccggagttgttcttcttggtggagggaggtagggcggattaggga 17659339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 152
Target Start/End: Complemental strand, 36157726 - 36157658
Alignment:
Q  84 gggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatggg 152  Q
    |||||||||||||| ||||||||||||  ||| |||||||||| ||| || | || |||||| ||||||    
T  36157726 gggaggttggaggttgggggccggagttgttcttcttggtggagggaggtggcgaggattagagatggg 36157658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 93
Target Start/End: Original strand, 63792 - 63876
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttgg 93  Q
    ||||||||||| |||||| | || | ||||  |||||||||||| ||| |||| |||||||||| ||||||||||||||||||||    
T  63792 tggtgttggcggatgttgatggacaaagataatttttggtatagagtgttggtggcgagatatgatgaggaggcagggaggttgg 63876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 42 - 125
Target Start/End: Complemental strand, 67694 - 67611
Alignment:
Q  42 ttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtgg 125  Q
    ||||||||||||||| || |  | || ||||||||||||||||||||||||||||| |||||| |||||  ||| |||||||||    
T  67694 ttttggtatagggtgttgatttctaggtatggtgaggaggcagggaggttggaggttgggggctggagtggttcttcttggtgg 67611  T

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Target: scaffold0061 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 110
Target Start/End: Complemental strand, 55278 - 55208
Alignment:
Q  40 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagt 110  Q
    |||| |||||||||||| |||| ||||||||||| |||||||  | |||||||||||| ||||||||||||    
T  55278 gtttatggtatagggtgttggtggcgagatatggcgaggaggatgagaggttggaggttgggggccggagt 55208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 110
Target Start/End: Original strand, 143356 - 143426
Alignment:
Q  40 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagt 110  Q
    |||| |||||||||||| |||| ||||||||||| |||||||  | |||||||||||| ||||||||||||    
T  143356 gtttatggtatagggtgttggtggcgagatatggcgaggaggatgagaggttggaggttgggggccggagt 143426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 4049 - 4095
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggt 55  Q
    ||||||||||| |||||||| |||||||||||||| |||||||||||    
T  4049 tggtgttggcggatgttggtggatagagatggtttgtggtatagggt 4095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 134347 - 134393
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggt 55  Q
    ||||||||||| |||||||| |||||||||||||| |||||||||||    
T  134347 tggtgttggcggatgttggtggatagagatggtttgtggtatagggt 134393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 312174 - 312220
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggt 55  Q
    ||||||||||| |||||||| |||||||||||||| |||||||||||    
T  312174 tggtgttggcggatgttggtggatagagatggtttgtggtatagggt 312220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 327628 - 327674
Alignment:
Q  9 tggtgttggcgaatgttggtagatagagatggtttttggtatagggt 55  Q
    ||||||||||| |||||||| |||||||||||||| |||||||||||    
T  327628 tggtgttggcggatgttggtggatagagatggtttgtggtatagggt 327674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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