View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8905A_low_180 (Length: 250)

Name: NF8905A_low_180
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8905A_low_180
NF8905A_low_180
[»] chr5 (4 HSPs)
chr5 (1-240)||(37704732-37704971)
chr5 (26-87)||(37699288-37699349)
chr5 (145-187)||(30384256-30384298)
chr5 (146-182)||(1630012-1630048)
[»] chr4 (2 HSPs)
chr4 (6-87)||(16840857-16840944)
chr4 (147-187)||(31095092-31095132)
[»] chr6 (2 HSPs)
chr6 (147-189)||(17411089-17411131)
chr6 (146-189)||(196244-196287)
[»] chr8 (1 HSPs)
chr8 (147-192)||(18080600-18080645)
[»] chr3 (1 HSPs)
chr3 (146-189)||(44291420-44291463)
[»] chr7 (2 HSPs)
chr7 (146-184)||(12422352-12422390)
chr7 (157-189)||(32857805-32857837)


Alignment Details
Target: chr5 (Bit Score: 176; Significance: 6e-95; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 37704732 - 37704971
Alignment:
Q  1 aaaagacacctgaaatgaagaaaataacattaattgtatttagaatcggagacttagacttcttcaaatgtacatactttaaagagcaaattacgatact 100  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  37704732 aaaatacacctgaaatgaagaaaataacattaattgtatttagaatcggagacttagacttcttcaaatgtacatactttaaagagcaaattacgagact 37704831  T
Q  101 tttaagttatttaattataacaaatcggnnnnnnnnnnnnnnnncgtatcacttacgtcatttaagttatttaattataacaagttagttatgtagttgc 200  Q
    ||||||||||||||||||||||||||||                |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  37704832 tttaagttatttaattataacaaatcggttttttaagattttttcgtatcacttgcgtcatttaagttatttaattataacaagttagttatgtagttgc 37704931  T
Q  201 tcaaaaaacaagttagttatgtaagtatttttcataacac 240  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  37704932 tcaaaaaacaagttagttatgtaagtatttttcgtaacac 37704971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 37699288 - 37699349
Alignment:
Q  26 aacattaattgtatttagaatcggagacttagacttcttcaaatgtacatactttaaagagc 87  Q
    |||||||||||||||||| | ||||||||||||||||||||| || ||| ||||||||||||    
T  37699288 aacattaattgtatttagcaacggagacttagacttcttcaactgaacagactttaaagagc 37699349  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 187
Target Start/End: Original strand, 30384256 - 30384298
Alignment:
Q  145 cgtatcacttacgtcatttaagttatttaattataacaagtta 187  Q
    ||||| ||||||||| |||||||||||||||| ||||||||||    
T  30384256 cgtattacttacgtcttttaagttatttaattgtaacaagtta 30384298  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 1630048 - 1630012
Alignment:
Q  146 gtatcacttacgtcatttaagttatttaattataaca 182  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  1630048 gtatcacttacgtcttttaagttatttaatcataaca 1630012  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 87
Target Start/End: Complemental strand, 16840944 - 16840857
Alignment:
Q  6 acacctgaaatgaagaaaataa------cattaattgtatttagaatcggagacttagacttcttcaaatgtacatactttaaagagc 87  Q
    ||||||||||||||||||||||      |||||| ||||||||||| |||||||||||||||| |||| | | |||||||||||||||    
T  16840944 acacctgaaatgaagaaaataataacaacattaaatgtatttagaagcggagacttagacttcgtcaactatccatactttaaagagc 16840857  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 31095092 - 31095132
Alignment:
Q  147 tatcacttacgtcatttaagttatttaattataacaagtta 187  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  31095092 tatcacttacgtcctttaagttatttaattataacaagtta 31095132  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 189
Target Start/End: Original strand, 17411089 - 17411131
Alignment:
Q  147 tatcacttacgtcatttaagttatttaattataacaagttagt 189  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  17411089 tatcacttacgtcatttaagttatttaattgtaacaagttagt 17411131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 189
Target Start/End: Complemental strand, 196287 - 196244
Alignment:
Q  146 gtatcacttacgtcatttaagttatttaattataacaagttagt 189  Q
    ||||||||||||||||||||||||||||||| ||| || |||||    
T  196287 gtatcacttacgtcatttaagttatttaattgtaataatttagt 196244  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 192
Target Start/End: Original strand, 18080600 - 18080645
Alignment:
Q  147 tatcacttacgtcatttaagttatttaattataacaagttagttat 192  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||    
T  18080600 tatcacttacgtcatttaagttatttaattgtaataagttagttat 18080645  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 189
Target Start/End: Complemental strand, 44291463 - 44291420
Alignment:
Q  146 gtatcacttacgtcatttaagttatttaattataacaagttagt 189  Q
    |||||||||| ||| |||||||||||||||| ||||||||||||    
T  44291463 gtatcacttatgtcctttaagttatttaattgtaacaagttagt 44291420  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 184
Target Start/End: Complemental strand, 12422390 - 12422352
Alignment:
Q  146 gtatcacttacgtcatttaagttatttaattataacaag 184  Q
    |||||||||||||| |||||||||||||||| |||||||    
T  12422390 gtatcacttacgtcttttaagttatttaattttaacaag 12422352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 189
Target Start/End: Original strand, 32857805 - 32857837
Alignment:
Q  157 gtcatttaagttatttaattataacaagttagt 189  Q
    |||||||||||||||||||| ||||||||||||    
T  32857805 gtcatttaagttatttaattgtaacaagttagt 32857837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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